MirGeneDB 3.0
MirGeneDB ID

Gsa-Bantam

Family name BANTAM (all species)
Seed GAGAUCA
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-bantam
Paralogues
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o1  Asu-Bantam-o2  Asu-Bantam-o3  Ava-Bantam-P23  Ava-Bantam-P24  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4  Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c  Csc-Bantam-P16  Csc-Bantam-P17  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Efe-Bantam-P6  Efe-Bantam-P7  Efe-Bantam-P8  Egr-Bantam-P27  Esc-Bantam  Gpa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Isc-Bantam-P9a  Isc-Bantam-P9b  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Lpo-Bantam-P10  Lpo-Bantam-P11  Lpo-Bantam-P12  Lpo-Bantam-P13  Lpo-Bantam-P14  Lpo-Bantam-P15  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Pdu-Bantam-P25  Pdu-Bantam-P26  Ple-Bantam  Pve-Bantam  Rph-Bantam-P21  Rph-Bantam-P22  Sma-Bantam  Sme-Bantam-P18  Sme-Bantam-P19  Sme-Bantam-P20  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006948641: 4769-4854 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUUGUGACAAAAUUGUAUUCACAAUUACCAGCGGUUCAUGUGAUCUGAGAUUAUGAAAUGCUGAGAGAGGGUUCAUUUCUCCUCUCAUUCUGAGAUCACACUUAUUGCUGAUUAUUUGAAUAUUAGAUCAACCAUGUAUUGAA
Get precursor sequence
Structure
        10           20        30        40        50        60        70  
GAUUUUGUGACAAAAUU---|      C   UAC       UCA        G   UUAUGAAAUGCUGAGAGA 
                    GUAUUCA AAU   CAGCGGU   UGUGAUCU AGA                  G
                    UAUAAGU UUA   GUCGUUA   ACACUAGA UCU                  G
AAGUUAUGUACCAACUAGAU^      -   UUA       UUC        G   UACUCUCCUCUUUACUUG 
    140       130       120        110       100        90        80
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Gsa-Bantam_5p*
mirBase accessionMIMAT0035290
Sequence 
0- CCAGCGGUUCAUGUGAUCUGAGA -23
Get sequence
Mature sequence

Gsa-Bantam_3p
mirBase accessionMIMAT0035291
Sequence 
63- UGAGAUCACACUUAUUGCUGAUU -86
Get sequence