MirGeneDB 3.0

MirGeneDB ID

Ava-Bantam-P23

Family name BANTAM (all species)
Seed GAGAUUA
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Bantam-P24 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)
CP075497.1: 11671895-11671959 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUGAAACGCUUGUUGGAAAGAUGUGGCCAGUUCUUGUGAUAGUCCUCAAAUCGAGAUUGAAUUUAUUUUUUGAGAUUAUCACGAAAGCUGGUCGCACAAGUGUUUGUUCGUUCAAUGUUUCG
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Structure
        10        20          30        40        50        60  
AAGAUGAAACGCUUGUUGGAAAGA--|          C           C     UCGAGAUU 
                          UGUGGCCAGUU UUGUGAUAGUC UCAAA        G
                          ACGCUGGUCGA AGCACUAUUAG AGUUU        A
GCUUUGUAACUUGCUUGUUUGUGAAC^          A           -     UUUAUUUA 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
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Star sequence

Ava-Bantam-P23_5p*

mirBase accessionNone
Sequence
0- CAGUUCUUGUGAUAGUCCUCAAAU -24
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Mature sequence

Ava-Bantam-P23_3p

mirBase accessionNone
Sequence
43- UGAGAUUAUCACGAAAGCUGGU -65
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