| MirGeneDB ID | Ava-Bantam-P24 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Seed |
GAGAUCA |
|---|
| Species |
Bdelloid rotifer (Adineta vaga) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ava-Bantam-P23
|
|---|
| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
|---|
| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 5822042-5822105 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUACGAAAAUUAUCGACAAGUUCGAACGGUUGGAUAAAAAUAUGAUCUACACAUGGAUUUCCAAUGAAUUUGUGAGAUCACAUUUUUAUUCUAUUGUUGACUUCUCUACAAAAUUACGAUAAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUACGAAAAUUAUCGAC----| CG U A A UGGAUUUC
AAGUU AACGGU GGAUAAAAAU UGAUCU CACA \
UUCAG UUGUUA CUUAUUUUUA ACUAGA GUGU C
UUAAUAGCAUUAAAACAUCUC^ -- U C - UUAAGUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ava-Bantam-P24_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGAUAAAAAUAUGAUCUACACA -23
Get sequence
|
|---|
| Mature sequence |
Ava-Bantam-P24_3p |
| mirBase accession | None |
|---|
| Sequence |
42- UGAGAUCACAUUUUUAUUCUAU -64
Get sequence
|
|---|
