MirGeneDB 3.0
MirGeneDB ID

Asu-Bantam-o3

Family name BANTAM (all species)
Seed GAGAUCA
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-81b
Paralogues Asu-Bantam-o1  Asu-Bantam-o2 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P3  Cel-Bantam-P3  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold20: 148295-148353 [+]
Clustered miRNAs
(< 50kb from Bantam-o3)		 Bantam-o2 Scaffold20: 144531-144589 [+]
Bantam-o3 Scaffold20: 148295-148353 [+]
Precursor
(pre-Mir +30nt flank)
CAGCGAUCGAUUAUCGGAGUCGUUCUCAAAACGGGUGUGCAUGCAGAUCAUGGUGUAAUAUAGCUCAUGAGAUCAUGCCACAUCUGUCUUGAAAGCCACUCCUUUCUUCCUUCUCGUUU
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Structure
        10          20        30         40        50         
CAGCGAUCGAUUAUCGG--   C   C    A        -|    CAGA     GUGUAA 
                   AGU GUU UCAA ACGGGUGU GCAUG    UCAUG      \
                   UCA CGA AGUU UGUCUACA CGUAC    AGUAC      U
UUUGCUCUUCCUUCUUUCC   C   A    C        C^    UAG-     UCGAUA 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Bantam-o3_5p*
mirBase accessionMIMAT0021419
Sequence 
0- ACGGGUGUGCAUGCAGAUCAUG -22
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Mature sequence

Asu-Bantam-o3_3p
mirBase accessionMIMAT0021420
Sequence 
37- UGAGAUCAUGCCACAUCUGUCU -59
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