| MirGeneDB ID | Asu-Bantam-o1 |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Large roundworm (Ascaris suum) |
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| MiRBase ID |
asu-mir-81a
|
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| Paralogues |
Asu-Bantam-o2
Asu-Bantam-o3
|
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| Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cbr-Bantam-P1a
Cbr-Bantam-P1b
Cel-Bantam-P1
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
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| Node of Origin (locus) |
A. suum
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| Node of Origin (family) |
Protostomia
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Genome context
(ASU_PRJNA80881_plustraces) |
Scaffold406: 346015-346076 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GUGUAAUUCAACGUGCACCGCACGGGCACUAGGCCUUCACUGUGAUCUGCAGAAUGCCUGUUAUACUGUCUGAGAUCAUUGUGAAAGCUAUUUGCCUUGCUUGUGGAUACACCGUCGACGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
GUGUAAUUCAACGUGCACC---| C CUA C U G AUGCCUG
GCA GGGCA GGC UUCAC GUGAUCU CAGA \
CGU UCCGU UCG AAGUG UACUAGA GUCU U
UUGCAGCUGCCACAUAGGUGUU^ - UUA A U - GUCAUAU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| 0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
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| Star sequence |
Asu-Bantam-o1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGCCUUCACUGUGAUCUGCAGA -23
Get sequence
|
|---|
| Mature sequence |
Asu-Bantam-o1_3p |
| mirBase accession | MIMAT0021474 |
|---|
| Sequence |
40- UGAGAUCAUUGUGAAAGCUAUU -62
Get sequence
|
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