MirGeneDB 3.0

MirGeneDB ID

Cel-Bantam-P1

Family name BANTAM (all species)
Seed GAGAUCG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-58a
Paralogues Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o1  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)
chrIV: 3233269-3233335 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCUAUCCCCCGAUGCUCGUCAUAUCCAUUGCCCUACUCUUCGCAUCUCAUCACUUCGUCCAAUACCAUAGGGAUGAGAUCGUUCAGUACGGCAAUGGACUGAGCUAGAGUGACCUCUGAUAAUAC
Get precursor sequence
Structure
        10        20           30        40        50        60   
GACCUAUCCCCCGAUGCUCG---|  UA         C    CUU  C        ACUUCGUCC 
                       UCA  UCCAUUGCC UACU   CG AUCUCAUC         A
                       AGU  AGGUAACGG AUGA   GC UAGAGUAG         A
CAUAAUAGUCUCCAGUGAGAUCG^  C-         C    CUU  -        GGAUACCAU 
     120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Bantam-P1_5p*

mirBase accessionMIMAT0015100
Sequence
0- UGCCCUACUCUUCGCAUCUCAUC -23
Get sequence
Proposed targets microrna.org: MIMAT0015100
Mature sequence

Cel-Bantam-P1_3p

mirBase accessionMIMAT0000030
Sequence
45- UGAGAUCGUUCAGUACGGCAAU -67
Get sequence
Proposed targets microrna.org: MIMAT0000030
TargetScanWorm: cel-miR-58