MirGeneDB 3.0

MirGeneDB ID

Cel-Bantam-P5a

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-2209a
Paralogues Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5b  Cel-Bantam-P5c 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) C. elegans
Node of Origin (family) Protostomia
Genome context
(ce11)
chrIV: 1027102-1027164 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Bantam-P5a)
Bantam-P5b chrIV: 1021303-1021365 [-] UCSC Ensembl
Mir-2208-P1 chrIV: 1021772-1021832 [+] UCSC Ensembl
Mir-2208-P2 chrIV: 1026580-1026640 [+] UCSC Ensembl
Bantam-P5a chrIV: 1027102-1027164 [+] UCSC Ensembl
Bantam-P5c chrIV: 1027219-1027281 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCAACAACCAUGACUCUCAGGAAUGGUGAGUGUAACCACUCUUCUCCUUCCGAGUAUUGAUUAUCGAGAAGAGAUCAGCGGUUACACUACAUUAUUAGUAAGAGUCCUUAUUCAUAUUCCG
Get precursor sequence
Structure
        10          20        30         40        50        60 
AUCCAACAACCAUGACU--  CAGG       -|        A  CU    C   CGAGUAUU 
                   CU    AAUGGUG AGUGUAACC CU  UCUC UUC        \
                   GA    UUAUUAC UCACAUUGG GA  AGAG AAG        G
GCCUUAUACUUAUUCCUGA  AUGA       A^        C  CU    -   AGCUAUUA 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Bantam-P5a_5p*

mirBase accessionMIMAT0011431
Sequence
0- AGUGUAACCACUCUUCUCCUUC -22
Get sequence
Proposed targets microrna.org: MIMAT0011431
Mature sequence

Cel-Bantam-P5a_3p

mirBase accessionMIMAT0011432
Sequence
41- AGAGAUCAGCGGUUACACUACA -63
Get sequence
Proposed targets microrna.org: MIMAT0011432
TargetScanWorm: cel-miR-2209a