MirGeneDB 3.0

MirGeneDB ID

Cel-Bantam-P3

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-81
Paralogues Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o3  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P3  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)
chrX: 2431096-2431159 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Bantam-P3)
Bantam-P3 chrX: 2431096-2431159 [+] UCSC Ensembl
Bantam-P4 chrX: 2435273-2435333 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAAAAUCAGUGCCAUCGUGCCCAACAGUCGGUUUUCACCGUGAUCUGAGAGCAAUCCAAAAAUGCUUUUCUGAGAUCAUCGUGAAAGCUAGUUGUUGGUCUACGGGCUUUUGCGAAAUACUC
Get precursor sequence
Structure
        10         20         30        40        50        60 
CAUAAAAUCAGUGCCAU-    C-|      UC         C       G   GCAAUCCA 
                  CGUG  CCAACAG  GGUUUUCAC GUGAUCU AGA        A
                  GCAU  GGUUGUU  UCGAAAGUG UACUAGA UCU        A
CUCAUAAAGCGUUUUCGG    CU^      GA         C       G   UUUCGUAA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Bantam-P3_5p*

mirBase accessionMIMAT0015109
Sequence
0- CGGUUUUCACCGUGAUCUGAGA -22
Get sequence
Proposed targets microrna.org: MIMAT0015109
Mature sequence

Cel-Bantam-P3_3p

mirBase accessionMIMAT0000054
Sequence
42- UGAGAUCAUCGUGAAAGCUAGU -64
Get sequence
Proposed targets microrna.org: MIMAT0000054
TargetScanWorm: cel-miR-81