MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-2208-P1

Family name MIR-2208 (all species)
Seed AGUGUAC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-2208a
Paralogues Cel-Mir-2208-P2 
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)		 chrIV: 1021772-1021832 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2208-P1)		 Bantam-P5b chrIV: 1021303-1021365 [-] UCSC Ensembl
Mir-2208-P1 chrIV: 1021772-1021832 [+] UCSC Ensembl
Mir-2208-P2 chrIV: 1026580-1026640 [+] UCSC Ensembl
Bantam-P5a chrIV: 1027102-1027164 [+] UCSC Ensembl
Bantam-P5c chrIV: 1027219-1027281 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUUUCCUAUUCGGGGACCCGCCAGUGGUAAGUGUACCCGAAUCUGAUAUCCUAUCAUCUGAAAAAGGAUGCAGUUUCUGGUAUACUUCACCAUUGGCUGGGUCUCUUAGCACUGCACUU
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Structure
        10        20         30         40        50        60
CCUUUUCCUAUUCGGGGA   -         -|        C   U   A     UAUCAU 
                  CCC GCCAGUGGU AAGUGUACC GAA CUG UAUCC      C
                  GGG CGGUUACCA UUCAUAUGG CUU GAC GUAGG      U
UUCACGUCACGAUUCUCU   U         C^        U   U   -     AAAAAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-2208-P1_5p
mirBase accessionMIMAT0011427
Sequence 
0- AAGUGUACCCGAAUCUGAUAUCC -23
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Proposed targets microrna.org: MIMAT0011427
TargetScanWorm: cel-miR-2208a
Star sequence

Cel-Mir-2208-P1_3p*
mirBase accessionMIMAT0011428
Sequence 
39- AUGCAGUUUCUGGUAUACUUCA -61
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Proposed targets microrna.org: MIMAT0011428