MirGeneDB 3.0
MirGeneDB ID

Sme-Bantam-P19

Family name BANTAM (all species)
Seed GAGAUCA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-bantam-b
Paralogues Sme-Bantam-P18  Sme-Bantam-P20 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Protostomia
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000024_dd_Smes_g4_24: 5777402-5777455 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGGUAAAAACUUAGCAGACUUUAAAAACCGGUUUUCGUUGAGAUCUUAGAUAUAUUCAUCUGAGAUCACUGCGAAAGCUGAUUAUGAAGUCGCUUUCUUCAUUAAAUACAGC
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Structure
        10           20        30        40        50      
AUUGGUAAAAACUUAGCA---|      AAAAC          UGA         UAU 
                     GACUUUA     CGGUUUUCGU   GAUCUUAGA   A
                     CUGAAGU     GUCGAAAGCG   CUAGAGUCU   U
CGACAUAAAUUACUUCUUUCG^      AUUA-          UCA         ACU 
  110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Bantam-P19_5p*
mirBase accessionMIMAT0012085
Sequence 
0- CGGUUUUCGUUGAGAUCUUAGA -22
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Mature sequence

Sme-Bantam-P19_3p
mirBase accessionMIMAT0003950
Sequence 
32- UGAGAUCACUGCGAAAGCUGAU -54
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