MirGeneDB ID | Sme-Bantam-P18 |
Family name |
BANTAM (all species) |
Seed |
GAGAUCA |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-bantam-a
|
Paralogues |
Sme-Bantam-P19
Sme-Bantam-P20
|
Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Protostomia
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000048_dd_Smes_g4_48: 1523214-1523273 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAAAAUUCGGUAAGAUUUUGUCAUCAUAUUGGUUUUACUAGUGAUCUAAGAAUGAUAUAUAAAAAUCUGAGAUCACUAUGAAAGCUGGUAAAAUGACAGUGGGCAACAUCAAAGUUUAA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAAAAUUCGGUAAGAUU--| CA UG AC A AUGAUA
UUGUCAU UAU GUUUU UAGUGAUCU AGA U
GACAGUA AUG CGAAA AUCACUAGA UCU A
AAUUUGAAACUACAACGGGU^ AA GU GU G AAAAAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Sme-Bantam-P18_5p* |
mirBase accession | None |
Sequence |
0- UGGUUUUACUAGUGAUCUAAGA -22
Get sequence
|
Mature sequence |
Sme-Bantam-P18_3p |
mirBase accession | MIMAT0003949 |
Sequence |
38- UGAGAUCACUAUGAAAGCUGGU -60
Get sequence
|