MirGeneDB 3.0

MirGeneDB ID

Rph-Bantam-P22

Family name BANTAM (all species)
Seed GAGAUCA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Bantam-P21 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)
CM018540.1: 15041340-15041400 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUAAUGUUAAUGACUGAUCUUAUACUAGCCUGGUUUUCGUAUUGGUCUGACAGAUAUAAAAUACUUCUGAGAUCAUUGCGAAAACUGAUUUGGUUCCCAAUAUGACAGCAGAACAAGACU
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Structure
        10        20          30        40        50        60 
GUUAAUGUUAAUGACUGAUCUUAU--|    CC           U      GA    UAUAA 
                          ACUAG  UGGUUUUCGUA UGGUCU  CAGA     \
                          UGGUU  GUCAAAAGCGU ACUAGA  GUCU     A
UCAGAACAAGACGACAGUAUAACCCU^    UA           U      --    UCAUA 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Bantam-P22_5p*

mirBase accessionNone
Sequence
0- CUGGUUUUCGUAUUGGUCUGACAGA -25
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Mature sequence

Rph-Bantam-P22_3p

mirBase accessionNone
Sequence
38- UGAGAUCAUUGCGAAAACUGAUU -61
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