MirGeneDB ID | Rph-Bantam-P22 |
Family name |
BANTAM (all species) |
Seed |
GAGAUCA |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Bantam-P21
|
Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
Protostomia
|
Genome context (Ruditapes_GCA_009026015) |
CM018540.1: 15041340-15041400 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUAAUGUUAAUGACUGAUCUUAUACUAGCCUGGUUUUCGUAUUGGUCUGACAGAUAUAAAAUACUUCUGAGAUCAUUGCGAAAACUGAUUUGGUUCCCAAUAUGACAGCAGAACAAGACU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUUAAUGUUAAUGACUGAUCUUAU--| CC U GA UAUAA
ACUAG UGGUUUUCGUA UGGUCU CAGA \
UGGUU GUCAAAAGCGU ACUAGA GUCU A
UCAGAACAAGACGACAGUAUAACCCU^ UA U -- UCAUA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Bantam-P22_5p* |
mirBase accession | None |
Sequence |
0- CUGGUUUUCGUAUUGGUCUGACAGA -25
Get sequence
|
Mature sequence |
Rph-Bantam-P22_3p |
mirBase accession | None |
Sequence |
38- UGAGAUCAUUGCGAAAACUGAUU -61
Get sequence
|