| MirGeneDB ID | Pdu-Bantam-P25 |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Bantam-P26
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| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000002.1: 72665914-72665975 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUCGCAUCGUCAGCGAACUUUAGACGAAACUGGUUUUCACAUUGGUCUUCCAGAGUGAGUUUCUCGUCUGAGAUCAUUGUGAAAACUGAUUUUGUCGCCCCCCUCAUCUGUCAGUUCUCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAUCGCAUCGUCAGCGAACUUUA--| CU U UC GUGAG
GACGAAA GGUUUUCACA UGGUCU CAGA U
CUGUUUU UCAAAAGUGU ACUAGA GUCU U
CUCUCUUGACUGUCUACUCCCCCCG^ AG U -- GCUCU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UGUG in loop |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Bantam-P25_5p* |
| mirBase accession | None |
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| Sequence |
0- CUGGUUUUCACAUUGGUCUUCCAGA -25
Get sequence
|
|---|
| Mature sequence |
Pdu-Bantam-P25_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UGAGAUCAUUGUGAAAACUGAUU -62
Get sequence
|
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