| MirGeneDB ID | Lpo-Bantam-P10 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Seed |
GAGAUCA |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
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| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Bantam-P11
Lpo-Bantam-P12
Lpo-Bantam-P13
Lpo-Bantam-P14
Lpo-Bantam-P15
|
|---|
| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013668390.1: 57984-58044 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UCCAGGAAAGCGGCUAUCCUGUAGACAAAACUGGUUUUCACAAUGAUUUGACAGAUGUGUUCGGUAUCUGAGAUCAUUGUGAAAGCUGAUUUUGUUGUCCUAUCAUCUCGCAGUUCACAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCCAGGAAAGCGGCUAUCCUGUA--| CU GA UGUGU
GACAAAA GGUUUUCACAAUGAUUU CAGA \
UUGUUUU UCGAAAGUGUUACUAGA GUCU U
AAACACUUGACGCUCUACUAUCCUG^ AG -- AUGGC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lpo-Bantam-P10_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUGGUUUUCACAAUGAUUUGACAGA -25
Get sequence
|
|---|
| Mature sequence |
Lpo-Bantam-P10_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGAUCAUUGUGAAAGCUGAUU -61
Get sequence
|
|---|
