| MirGeneDB ID | Lpo-Bantam-P12 |
|---|
| Family name |
BANTAM (all species) |
|---|
| Seed |
GAGAUCA |
|---|
| Species |
Atlantic horseshoe crab (Limulus polyphemus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Lpo-Bantam-P10
Lpo-Bantam-P11
Lpo-Bantam-P13
Lpo-Bantam-P14
Lpo-Bantam-P15
|
|---|
| Orthologues |
Aae-Bantam
Bge-Bantam
Bpl-Bantam
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
|---|
| Node of Origin (locus) |
L. polyphemus
|
|---|
| Node of Origin (family) |
Protostomia
|
|---|
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013667299.1: 126779-126839 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACAGUGAAAUAAUGAAUAUCUUGGACAAAACUGGCCUUCACAUUGAUUUCCCAGAUGGAUUCGUUUUCUGAGAUCAUUGUGAAAGCUGAUUUUGUUGUCCUAUCGGCGUGACGACUGUUGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACAGUGAAAUAAUGAAUAUCUUG--| CU C U CCAGAUGGA
GACAAAA GGC UUCACA UGAUUUC \
UUGUUUU UCG AAGUGU ACUAGAG U
UGUUGUCAGCAGUGCGGCUAUCCUG^ AG A U UCUUUUGCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Lpo-Bantam-P12_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUGGCCUUCACAUUGAUUUCCCA -23
Get sequence
|
|---|
| Mature sequence |
Lpo-Bantam-P12_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGAUCAUUGUGAAAGCUGAUU -61
Get sequence
|
|---|
