MirGeneDB 3.0

MirGeneDB ID

Efe-Bantam-P8

Family name BANTAM (all species)
Seed GAGAUCA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Bantam-P6  Efe-Bantam-P7 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.377353: 2266-2325 [+]
Precursor
(pre-Mir +30nt flank)
NNNNNNNNNACCGACUGAACCGUGUCAAGUCGGCUUUCGCACUGAUUGCCCAGAUGAUCCUUGACCUCUGAGAUCACUGUGAAAACCGACUGAGGCCGGUCAGAGCGACGCAGCAGCGAC
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Structure
        10          20         30        40        50        60
NNNNNNNNNACCGACUGA--|   U   A-      C       C     GCC    UGAUC 
                    ACCG GUC  AGUCGG UUUCGCA UGAUU   CAGA     C
                    UGGC CGG  UCAGCC AAAGUGU ACUAG   GUCU     U
CAGCGACGACGCAGCGAGAC^   -   AG      A       C     A--    CCAGU 
.       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Bantam-P8_5p*

mirBase accessionNone
Sequence
0- CGGCUUUCGCACUGAUUGCCCAGA -24
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Mature sequence

Efe-Bantam-P8_3p

mirBase accessionNone
Sequence
38- UGAGAUCACUGUGAAAACCGAC -60
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