MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-8

Family name MIR-8 (all species)
Seed AAUACUG
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Aca-Mir-8-P2a  Aca-Mir-8-P3a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P1a  Ami-Mir-8-P2a  Ami-Mir-8-P3a  Asu-Mir-8  Ava-Mir-8-P16  Ava-Mir-8-P17  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bfl-Mir-8-P2  Bfl-Mir-8-P3  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bla-Mir-8-P2  Bla-Mir-8-P3  Bpl-Mir-8  Bta-Mir-8-P1a  Bta-Mir-8-P1b  Bta-Mir-8-P2a  Bta-Mir-8-P2b  Bta-Mir-8-P3a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cfa-Mir-8-P1b  Cfa-Mir-8-P2a  Cfa-Mir-8-P2b  Cfa-Mir-8-P3a  Cin-Mir-8-P1  Cin-Mir-8-P2  Cja-Mir-8-P1a  Cja-Mir-8-P1b  Cja-Mir-8-P2a  Cja-Mir-8-P2b  Cja-Mir-8-P3a  Cli-Mir-8-P1a  Cli-Mir-8-P2a  Cli-Mir-8-P3a  Cmi-Mir-8-P1a  Cmi-Mir-8-P2a  Cmi-Mir-8-P3a  Cpi-Mir-8-P1a  Cpi-Mir-8-P2a  Cpi-Mir-8-P3a  Cpo-Mir-8-P1a  Cpo-Mir-8-P1b  Cpo-Mir-8-P2a  Cpo-Mir-8-P2b  Cpo-Mir-8-P3a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dno-Mir-8-P2a  Dno-Mir-8-P2b  Dno-Mir-8-P3a  Dpu-Mir-8  Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dre-Mir-8-P2a  Dre-Mir-8-P2b  Dre-Mir-8-P3a  Dre-Mir-8-P3b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Ebu-Mir-8-P1o1  Ebu-Mir-8-P2o1  Ebu-Mir-8-P3o1  Eca-Mir-8-P1a  Eca-Mir-8-P1a-as  Eca-Mir-8-P1b  Eca-Mir-8-P2a  Eca-Mir-8-P2a-as  Eca-Mir-8-P2b  Eca-Mir-8-P3a  Efe-Mir-8-P4  Efe-Mir-8-P5  Efe-Mir-8-P6  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Ete-Mir-8-P1b  Ete-Mir-8-P2a  Ete-Mir-8-P2b  Ete-Mir-8-P3a  Gga-Mir-8-P1a  Gga-Mir-8-P2a  Gga-Mir-8-P3a  Gja-Mir-8-P1a  Gja-Mir-8-P2a  Gja-Mir-8-P3a  Gmo-Mir-8-P1a  Gmo-Mir-8-P2a  Gmo-Mir-8-P3a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1a  Hsa-Mir-8-P1b  Hsa-Mir-8-P2a  Hsa-Mir-8-P2b  Hsa-Mir-8-P3a  Isc-Mir-8  Laf-Mir-8-P1a  Laf-Mir-8-P1b  Laf-Mir-8-P2a  Laf-Mir-8-P2b  Laf-Mir-8-P3a  Lan-Mir-8  Lch-Mir-8-P1a  Lch-Mir-8-P1b  Lch-Mir-8-P2a  Lch-Mir-8-P3a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P1a  Loc-Mir-8-P2a  Loc-Mir-8-P3a  Lpo-Mir-8-P7  Lpo-Mir-8-P8  Lpo-Mir-8-P9  Lpo-Mir-8-P10  Lpo-Mir-8-P11  Lpo-Mir-8-P12  Lpo-Mir-8-P13  Mal-Mir-8-P1a  Mal-Mir-8-P2a  Mal-Mir-8-P3a  Mdo-Mir-8-P1a  Mdo-Mir-8-P1b  Mdo-Mir-8-P2a  Mdo-Mir-8-P2b  Mdo-Mir-8-P3a  Mgi-Mir-8  Mml-Mir-8-P1a  Mml-Mir-8-P1b  Mml-Mir-8-P2a  Mml-Mir-8-P2b  Mml-Mir-8-P3a  Mmr-Mir-8-P1a  Mmr-Mir-8-P1b  Mmr-Mir-8-P2a  Mmr-Mir-8-P2b  Mmr-Mir-8-P3a  Mmu-Mir-8-P1a  Mmu-Mir-8-P1b  Mmu-Mir-8-P2a  Mmu-Mir-8-P2b  Mmu-Mir-8-P3a  Mom-Mir-8  Mun-Mir-8-P1a  Mun-Mir-8-P2a  Mun-Mir-8-P3a  Neu-Mir-8-P1a  Neu-Mir-8-P1b  Neu-Mir-8-P2a  Neu-Mir-8-P3a  Npo-Mir-8  Oan-Mir-8-P1a  Oan-Mir-8-P1b  Oan-Mir-8-P2a  Oan-Mir-8-P2b  Oan-Mir-8-P3a  Obi-Mir-8  Ocu-Mir-8-P1a  Ocu-Mir-8-P1b  Ocu-Mir-8-P2a  Ocu-Mir-8-P2b  Ocu-Mir-8-P3a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1a  Pab-Mir-8-P1b  Pab-Mir-8-P2a  Pab-Mir-8-P2b  Pab-Mir-8-P3a  Pau-Mir-8  Pbv-Mir-8-P1a  Pbv-Mir-8-P2a  Pbv-Mir-8-P3a  Pca-Mir-8  Pcr-Mir-8-P18  Pcr-Mir-8-P19  Pdu-Mir-8  Pfl-Mir-8  Pma-Mir-8-P1o2  Pma-Mir-8-P2o2  Pma-Mir-8-P3o2  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1a  Rno-Mir-8-P1b  Rno-Mir-8-P2a  Rno-Mir-8-P2b  Rno-Mir-8-P3a  Sha-Mir-8-P1a  Sha-Mir-8-P1b  Sha-Mir-8-P2a  Sha-Mir-8-P2b  Sha-Mir-8-P3a  Sko-Mir-8  Sma-Mir-8  Sme-Mir-8-P14  Sme-Mir-8-P15  Snu-Mir-8  Spt-Mir-8-P1a  Spt-Mir-8-P2a  Spt-Mir-8-P3a  Spu-Mir-8  Sto-Mir-8-P1a  Sto-Mir-8-P2a  Sto-Mir-8-P3a  Tca-Mir-8  Tgu-Mir-8-P1a  Tgu-Mir-8-P2a  Tni-Mir-8-P1a  Tni-Mir-8-P2a  Tni-Mir-8-P3a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2  Xtr-Mir-8-P1a  Xtr-Mir-8-P2a  Xtr-Mir-8-P3a 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018530.1: 30403015-30403074 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUCGAGUAUUUUUUCGGGGUUUGAUGCCAUCUUACUUGAUAGCAUUAGGCUGGGACGCCUGAUCUAAUACUGUCAGGUAAAGAUGUCCGCAGAUCUCGACCACUUCGAAUACAGAAA
Get precursor sequence
Structure
        10          20        30         40        50         
AUGUUCGAGUAUUUUUU--         AUGC    -|          C      CUGGGA 
                   CGGGGUUUG    CAUC UUACUUGAUAG AUUAGG      \
                   GCUCUAGAC    GUAG AAUGGACUGUC UAAUCU      C
AAAGACAUAAGCUUCACCA         GCCU    A^          A      AGUCCG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-8_5p*
mirBase accessionNone
Sequence 
0- CAUCUUACUUGAUAGCAUUAGG -22
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Mature sequence

Rph-Mir-8_3p
mirBase accessionNone
Sequence 
37- UAAUACUGUCAGGUAAAGAUGUC -60
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