MirGeneDB ID | Ava-Mir-8-P16 |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-8-P17
|
Orthologues |
Aae-Mir-8
Aga-Mir-8
Agr-Mir-8
Asu-Mir-8
Bge-Mir-8
Bko-Mir-8
Bpl-Mir-8
Cbr-Mir-8
Cel-Mir-8
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dgr-Mir-8
Dlo-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dpu-Mir-8
Dsi-Mir-8
Dya-Mir-8
Eba-Mir-8
Egr-Mir-8
Esc-Mir-8
Gpa-Mir-8
Gsa-Mir-8
Hme-Mir-8
Hru-Mir-8
Isc-Mir-8
Lan-Mir-8
Lgi-Mir-8
Lhy-Mir-8
Llo-Mir-8
Mgi-Mir-8
Mom-Mir-8
Npo-Mir-8
Obi-Mir-8
Ofu-Mir-8
Ovu-Mir-8
Pau-Mir-8
Pca-Mir-8
Pdu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Pve-Mir-8
Rph-Mir-8
Sko-Mir-8
Sma-Mir-8
Snu-Mir-8
Spu-Mir-8
Tca-Mir-8
Tur-Mir-8
War-Mir-8
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075494.1: 9601080-9601142 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACUUUUCUUUUAAAAGAGUAGCUACAUUUCAUCUUACUAUACAGCAUUAGUUCGAUAAUAUUGAUUUGCUAAUACUGUCAGGUAAAGAUGGCAUAAGGAUGCUCAUUCGACGAAAGUAUUAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACUUUUCUUUUAAAAG-- G AC U -| AU C UCGAUAA
AGUA CU AU UCAUC UUACU ACAG AUUAGU U
UCGU GG UA GGUAG AAUGG UGUC UAAUCG A
UAUUAUGAAAGCAGCUUAC A AA C A^ AC A UUUAGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ava-Mir-8-P16_5p* |
mirBase accession | None |
Sequence |
0- CAUCUUACUAUACAGCAUUAGU -22
Get sequence
|
Mature sequence |
Ava-Mir-8-P16_3p |
mirBase accession | None |
Sequence |
40- UAAUACUGUCAGGUAAAGAUGGC -63
Get sequence
|