MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-8-P2a

Family name MIR-8 (all species)
Seed AACACUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-200a
Paralogues Cpo-Mir-8-P1a  Cpo-Mir-8-P1b  Cpo-Mir-8-P2b  Cpo-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cin-Mir-8-P2  Cja-Mir-8-P2a  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P2a  Eca-Mir-8-P2a-as  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Laf-Mir-8-P2a  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mgi-Mir-8  Mml-Mir-8-P2a  Mmr-Mir-8-P2a  Mmu-Mir-8-P2a  Mom-Mir-8  Mun-Mir-8-P2a  Neu-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ocu-Mir-8-P2a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2a  Pau-Mir-8  Pbv-Mir-8-P2a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P2a  Rph-Mir-8  Sha-Mir-8-P2a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(cavPor3)		 scaffold_186: 1149699-1149759 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P2a)		 Mir-8-P3a scaffold_186: 1148974-1149032 [-] UCSC
Mir-8-P2a scaffold_186: 1149699-1149759 [-] UCSC
Mir-8-P1a scaffold_186: 1150409-1150467 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCAGGCUGGGCGCACCUGGGCCUCUGUGGGCAUCUUACCGGACAGUGCUGGAUUUCUUGGCUUGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCACUGCUCUGGAGAUAACC
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Structure
        10         20         30         40        50         
UCAGGCUGGGCGCACCU-   CC-   G        -|            C    UUUCUU 
                  GGG   UCU UGGGCAUC UUACCGGACAGUG UGGA      G
                  CCC   GGA ACUUGUAG AAUGGUCUGUCAC AUCU      G
CCAAUAGAGGUCUCGUCA   AGU   A        C^            A    CAGUUC 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-8-P2a_5p*
mirBase accessionMIMAT0047089
Sequence 
0- CAUCUUACCGGACAGUGCUGGA -22
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Mature sequence

Cpo-Mir-8-P2a_3p
mirBase accessionMIMAT0047090
Sequence 
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence