MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-8-P1b

Family name MIR-8 (all species)
Seed AAUACUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-200c
Paralogues Cpo-Mir-8-P1a  Cpo-Mir-8-P2a  Cpo-Mir-8-P2b  Cpo-Mir-8-P3a 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1b  Cin-Mir-8-P1  Cja-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dre-Mir-8-P1b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P1b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1b  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1b  Isc-Mir-8  Laf-Mir-8-P1b  Lan-Mir-8  Lch-Mir-8-P1b  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mdo-Mir-8-P1b  Mgi-Mir-8  Mml-Mir-8-P1b  Mmr-Mir-8-P1b  Mmu-Mir-8-P1b  Mom-Mir-8  Neu-Mir-8-P1b  Npo-Mir-8  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1b  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1b  Rph-Mir-8  Sha-Mir-8-P1b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(cavPor3)		 scaffold_107: 310458-310518 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P1b)		 Mir-8-P2b scaffold_107: 310108-310172 [-] UCSC
Mir-8-P1b scaffold_107: 310458-310518 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCUGUGGCAGACAGGCUGGGUGGGGGCCUUCGUCUUACCCUGCAGUGUUUGGGUGCUGGUUUGGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCCCUGGCCCUGUGGCACUGUCACCUCA
Get precursor sequence
Structure
        10         20         30         40        50         
GCUGUGGCAGACAGGCU-   -              -|     U        U  GUGCUG 
                  GGG UGGGGGCCUUCGUC UUACCC GCAGUGUU GG      G
                  CCC GUCCCCGGAGGUAG AAUGGG CGUCAUAA CU      U
ACUCCACUGUCACGGUGU   G              U^     C        U  CUGGUU 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-8-P1b_5p* (predicted)
mirBase accessionMIMAT0047093
Sequence 
0- CGUCUUACCCUGCAGUGUUUGG -22
Get sequence
Mature sequence

Cpo-Mir-8-P1b_3p
mirBase accessionMIMAT0047094
Sequence 
38- UAAUACUGCCGGGUAAUGAUGGA -61
Get sequence