Mir-8-P1-v2

MirGeneDB ID

Bfl-Mir-8-P1-v2

Family name

MIR-8 (all species)

Seed

AUACUGC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

bfl-mir-200a

Paralogues

Bfl-Mir-8-P1-v1 Bfl-Mir-8-P2 Bfl-Mir-8-P3

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Asu-Mir-8 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1a Cja-Mir-8-P1b Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Ebu-Mir-8-P1o1 Eca-Mir-8-P1a Eca-Mir-8-P1a-as Eca-Mir-8-P1b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Ete-Mir-8-P1b Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1a Hsa-Mir-8-P1b Isc-Mir-8 Laf-Mir-8-P1a Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1a Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mdo-Mir-8-P1b Mgi-Mir-8 Mml-Mir-8-P1a Mml-Mir-8-P1b Mmr-Mir-8-P1a Mmr-Mir-8-P1b Mmu-Mir-8-P1a Mmu-Mir-8-P1b Mom-Mir-8 Mun-Mir-8-P1a Neu-Mir-8-P1a Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1a Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1a Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pab-Mir-8-P1b Pau-Mir-8 Pbv-Mir-8-P1a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pma-Mir-8-P1o2 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1a Rno-Mir-8-P1b Rph-Mir-8 Sha-Mir-8-P1a Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Chordata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049992.1: 3180219-3180276 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-8-P1-v2)

Mir-8-P3 NC_049992.1: 3174683-3174743 [-] UCSC
Mir-8-P2 NC_049992.1: 3177478-3177535 [-] UCSC
Mir-8-P1-v1 NC_049992.1: 3180219-3180276 [-] UCSC
Mir-8-P1-v2 NC_049992.1: 3180219-3180276 [-] UCSC

Precursor
(pre-Mir +30nt flank)

ACAGAAGGACAUGUUAGCUUGAUUCCUGACAUCUUACUUGGCAGCAUUCGAUGUGUUUCCAUAUUCAAAUACUGCCUGGUAAUGAUGCCAGUCAAGUUUCCUCACAGUCCACAAUUGU

Get precursor sequence

Structure

        10             20        30         40        50        
ACAGAAGGACAUGUUAG-----|    UUC   A    -     U     C   C AUGUGUU 
                      CUUGA   CUG CAUC UUACU GGCAG AUU G       \
                      GAACU   GAC GUAG AAUGG CCGUC UAA C       U
UGUUAACACCUGACACUCCUUU^    ---   C    U     U     A   A UUAUACC 
      110       100           90        80        70        60

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

To

Star sequence

Bfl-Mir-8-P1-v2_5p* (predicted)

mirBase accession

None

Sequence

0- AUCUUACUUGGCAGCAUUCG -20

Get sequence

Mature sequence

Bfl-Mir-8-P1-v2_3p

mirBase accession

MIMAT0009491

Sequence

37- AAUACUGCCUGGUAAUGAUGC -58

Get sequence