MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-8-P3

Family name MIR-8 (all species)
Seed AAUACUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-200b
Paralogues Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bfl-Mir-8-P2 
Orthologues Aae-Mir-8  Aca-Mir-8-P3a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P3a  Asu-Mir-8  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P3  Bpl-Mir-8  Bta-Mir-8-P3a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P3a  Cja-Mir-8-P3a  Cli-Mir-8-P3a  Cmi-Mir-8-P3a  Cpi-Mir-8-P3a  Cpo-Mir-8-P3a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P3a  Dpu-Mir-8  Dre-Mir-8-P3a  Dre-Mir-8-P3b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Ebu-Mir-8-P3o1  Eca-Mir-8-P3a  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P3a  Gga-Mir-8-P3a  Gja-Mir-8-P3a  Gmo-Mir-8-P3a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P3a  Isc-Mir-8  Laf-Mir-8-P3a  Lan-Mir-8  Lch-Mir-8-P3a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P3a  Mal-Mir-8-P3a  Mdo-Mir-8-P3a  Mgi-Mir-8  Mml-Mir-8-P3a  Mmr-Mir-8-P3a  Mmu-Mir-8-P3a  Mom-Mir-8  Mun-Mir-8-P3a  Neu-Mir-8-P3a  Npo-Mir-8  Oan-Mir-8-P3a  Obi-Mir-8  Ocu-Mir-8-P3a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P3a  Pau-Mir-8  Pbv-Mir-8-P3a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pma-Mir-8-P3o2  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P3a  Rph-Mir-8  Sha-Mir-8-P3a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P3a  Spu-Mir-8  Sto-Mir-8-P3a  Tca-Mir-8  Tni-Mir-8-P3a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2  Xtr-Mir-8-P3a 
Node of Origin (locus) Chordata
Node of Origin (family) Nephrozoa
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049992.1: 3174683-3174743 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P3)		 Mir-8-P3 NC_049992.1: 3174683-3174743 [-] UCSC
Mir-8-P2 NC_049992.1: 3177478-3177535 [-] UCSC
Mir-8-P1-v1 NC_049992.1: 3180219-3180276 [-] UCSC
Mir-8-P1-v2 NC_049992.1: 3180219-3180276 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCAAUGCCGCACAGUUUGGGAUCUCGGCAACAUCUUACCAGGCAGCAUUUAGUUUUUGAAAGGAAUACUAAUACUGUCUGGUAAUGAUGUUGGUGGGGUUCAAACAGUCAUCAUGGUCCAU
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Structure
        10          20        30         40        50          
GCAAUGCCGCACAGUUUG--        G       -|          CAU     UUUUGA 
                    GGAUCUCG CAACAUC UUACCAGGCAG   UUAGU      \
                    CUUGGGGU GUUGUAG AAUGGUCUGUC   AAUCA      A
UACCUGGUACUACUGACAAA        G       U^          AU-     UAAGGA 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Bfl-Mir-8-P3_5p* (predicted)
mirBase accessionNone
Sequence 
0- CAUCUUACCAGGCAGCAUUUAGU -23
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Mature sequence

Bfl-Mir-8-P3_3p
mirBase accessionMIMAT0009492
Sequence 
38- UAAUACUGUCUGGUAAUGAUGUU -61
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