MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-8-P3b

Family name MIR-8 (all species)
Seed AAUACUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-429b
Paralogues Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dre-Mir-8-P2a  Dre-Mir-8-P2b  Dre-Mir-8-P3a 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P3  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P3  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Egr-Mir-8  Esc-Mir-8  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mgi-Mir-8  Mom-Mir-8  Npo-Mir-8  Obi-Mir-8  Ofu-Mir-8  Ovu-Mir-8  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rph-Mir-8  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(danRer11)
chr6: 40653151-40653208 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P3b)
Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUAUACUGCAGUAAAAUCCUCUGAUUUGUGUCUUACCAGGCAAGUUUAGAUGUUGAUACUGUGUCUAAUACUGCCUGGUAAUGCCAUCAAUCACUGGGAAUUUGAUCGCCAUUUUCC
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Structure
        10         20         30         40         50        
UCUAUACUGCAGUAAAA-    C-     U  -| C          A  -     UGUUGA 
                  UCCU  UGAUU GU GU UUACCAGGCA GU UUAGA      \
                  AGGG  ACUAA UA CG AAUGGUCCGU CA AAUCU      U
CCUUUUACCGCUAGUUUA    UC     C  C^ U          -  U     GUGUCA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-8-P3b_5p*

mirBase accessionNone
Sequence
0- GUCUUACCAGGCAAGUUUAGA -21
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Mature sequence

Dre-Mir-8-P3b_3p

mirBase accessionMIMAT0011291
Sequence
36- UAAUACUGCCUGGUAAUGCCAU -58
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Proposed targets TargetScanFish: dre-miR-429b