MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-8-P2b

Family name MIR-8 (all species)
Seed AACACUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-141
Paralogues Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dre-Mir-8-P2a  Dre-Mir-8-P3a  Dre-Mir-8-P3b 
Orthologues Aae-Mir-8  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2b  Cgi-Mir-8  Cin-Mir-8-P2  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2b  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P2b  Hme-Mir-8  Hsa-Mir-8-P2b  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Mdo-Mir-8-P2b  Mml-Mir-8-P2b  Mmu-Mir-8-P2b  Npo-Mir-8  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2b  Ovu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P2b  Sha-Mir-8-P2b  Sko-Mir-8  Spu-Mir-8  Tca-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(danRer11)
chr6: 40656013-40656073 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2b)
Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAGGAGUUCAUUCAUUGUCUCUAGGGUACAUCUUACCUGACAGUGCUUGGCUGUUCACUGAUGUUCUAACACUGUCUGGUAACGAUGCACUCUGGUGACUCAAUAAACCAUUAUGAUAU
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Structure
        10          20        30         40        50          
UGAAGGAGUUCAUUCAUU--   U       A    -|    U       C    CUGUUCA 
                    GUC CUAGGGU CAUC UUACC GACAGUG UUGG       \
                    CAG GGUCUCA GUAG AAUGG CUGUCAC AAUC       C
UAUAGUAUUACCAAAUAACU   U       C    C^    U       -    UUGUAGU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-8-P2b_5p*

mirBase accessionMIMAT0031974
Sequence
0- CAUCUUACCUGACAGUGCUUGGC -23
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Mature sequence

Dre-Mir-8-P2b_3p

mirBase accessionMIMAT0001837
Sequence
38- UAACACUGUCUGGUAACGAUGCA -61
Get sequence
Proposed targets TargetScanFish: dre-miR-141