Mir-8-P2b

MirGeneDB ID

Dre-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-141

Paralogues

Dre-Mir-8-P1a Dre-Mir-8-P1b Dre-Mir-8-P2a Dre-Mir-8-P3a Dre-Mir-8-P3b

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cin-Mir-8-P2 Cja-Mir-8-P2b Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2b Isc-Mir-8 Laf-Mir-8-P2b Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2b Mmr-Mir-8-P2b Mmu-Mir-8-P2b Mom-Mir-8 Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2b Rph-Mir-8 Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(danRer11)

chr6: 40656013-40656073 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGAAGGAGUUCAUUCAUUGUCUCUAGGGUACAUCUUACCUGACAGUGCUUGGCUGUUCACUGAUGUUCUAACACUGUCUGGUAACGAUGCACUCUGGUGACUCAAUAAACCAUUAUGAUAU

Get precursor sequence

Structure

        10          20        30         40        50          
UGAAGGAGUUCAUUCAUU--   U       A    -|    U       C    CUGUUCA 
                    GUC CUAGGGU CAUC UUACC GACAGUG UUGG       \
                    CAG GGUCUCA GUAG AAUGG CUGUCAC AAUC       C
UAUAGUAUUACCAAAUAACU   U       C    C^    U       -    UUGUAGU 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-8-P2b_5p*

mirBase accession

MIMAT0031974

Sequence

0- CAUCUUACCUGACAGUGCUUGGC -23

Get sequence

Mature sequence

Dre-Mir-8-P2b_3p

mirBase accession

MIMAT0001837

Sequence

38- UAACACUGUCUGGUAACGAUGCA -61

Get sequence

Proposed targets

TargetScanFish: dre-miR-141