Mir-8-P2b

MirGeneDB ID

Rno-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-141

Paralogues

Rno-Mir-8-P1a Rno-Mir-8-P1b Rno-Mir-8-P2a Rno-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cin-Mir-8-P2 Cja-Mir-8-P2b Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2b Isc-Mir-8 Laf-Mir-8-P2b Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2b Mmr-Mir-8-P2b Mmu-Mir-8-P2b Mom-Mir-8 Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(rn6)

chr4: 157236360-157236424 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P2b chr4: 157236360-157236424 [-] UCSC Ensembl
Mir-8-P1b chr4: 157236788-157236850 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAUCAAUUUAUGUUGGCUGACUCUGAGUCCAUCUUCCAGUGCAGUGUUGGAUGGUUGAAGUACGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGUCAGUUCCCUCAGCAGUGACCUU

Get precursor sequence

Structure

        10          20        30          40        50        60 
AGAUCAAUUUAUGUUGG--       UGAGU       --|   U          AUGGUUGAA 
                   CUGACUC     CCAUCUU  CCAG GCAGUGUUGG         G
                   GACUGGG     GGUAGAA  GGUC UGUCACAAUC         U
UUCCAGUGACGACUCCCUU       CCCCC       AU^   -          CUCGAAGCA 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-8-P2b_5p*

mirBase accession

MIMAT0017128

Sequence

0- CAUCUUCCAGUGCAGUGUUGGA -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-141-5p
miRDB: MIMAT0017128

Mature sequence

Rno-Mir-8-P2b_3p

mirBase accession

MIMAT0000846

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

Get sequence

Proposed targets

microrna.org: MIMAT0000846
TargetScanVert: rno-miR-141-3p
miRDB: MIMAT0000846