MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-8-P2b

Family name MIR-8 (all species)
Seed AACACUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-8-P1a  Cja-Mir-8-P1b  Cja-Mir-8-P2a  Cja-Mir-8-P3a 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2b  Cin-Mir-8-P2  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2b  Dpu-Mir-8  Dre-Mir-8-P2b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P2b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2b  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2b  Isc-Mir-8  Laf-Mir-8-P2b  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mdo-Mir-8-P2b  Mgi-Mir-8  Mml-Mir-8-P2b  Mmr-Mir-8-P2b  Mmu-Mir-8-P2b  Mom-Mir-8  Npo-Mir-8  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2b  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P2b  Rph-Mir-8  Sha-Mir-8-P2b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021923.1: 19327173-19327238 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGUAGCUCUCCAUUGGCCCGCCCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAAUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGUCGGUUCUUUCGGCUGUAACUUU
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Structure
        10         20        30          40        50        60  
GCCGUAGCUCUCCAUUG-   C    U   U       --|   U          AUGGUCUAA 
                  GCC GCCC GGG CCAUCUU  CCAG ACAGUGUUGG         U
                  UGG UGGG CCC GGUAGAA  GGUC UGUCACAAUC         U
UUUCAAUGUCGGCUUUCU   C    C   C       AU^   -          CUCGAAGUG 
    120       110       100        90         80        70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Cja-Mir-8-P2b_5p* (predicted)
mirBase accessionNone
Sequence 
0- CCAUCUUCCAGUACAGUGUUGG -22
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Mature sequence

Cja-Mir-8-P2b_3p
mirBase accessionNone
Sequence 
43- UAACACUGUCUGGUAAAGAUGGC -66
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