Mir-8-P2b

MirGeneDB ID

Hsa-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-141

Paralogues

Hsa-Mir-8-P1a Hsa-Mir-8-P1b Hsa-Mir-8-P2a Hsa-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cin-Mir-8-P2 Cja-Mir-8-P2b Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Laf-Mir-8-P2b Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2b Mmr-Mir-8-P2b Mmu-Mir-8-P2b Mom-Mir-8 Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2b Rph-Mir-8 Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(hg38)

chr12: 6964113-6964177 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P1b chr12: 6963703-6963764 [+] UCSC Ensembl
Mir-8-P2b chr12: 6964113-6964177 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGUAGUUCUCUGUCGGCCGGCCCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAAUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCUCCCGGGUGGGUUCUCUCGGCAGUAACCUU

Get precursor sequence

Structure

        10          20         30          40        50        60 
CCGUAGUUCUCUGUCGG--  G    U   U-       --|   U          AUGGUCUAA 
                   CC GCCC GGG  CCAUCUU  CCAG ACAGUGUUGG         U
                   GG UGGG CCC  GGUAGAA  GGUC UGUCACAAUC         U
UUCCAAUGACGGCUCUCUU  G    -   UC       AU^   -          CUCGAAGUG 
   120       110       100         90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-8-P2b_5p*

mirBase accession

MIMAT0004598

Sequence

0- CAUCUUCCAGUACAGUGUUGGA -22

Get sequence

Proposed targets

microrna.org: MIMAT0004598
TargetScanVert: hsa-miR-141-5p
TargetMiner: hsa-miR-141-5p
miRDB: MIMAT0004598

Mature sequence

Hsa-Mir-8-P2b_3p

mirBase accession

MIMAT0000432

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

Get sequence

Proposed targets

microrna.org: MIMAT0000432
TargetScanVert: hsa-miR-141-3p
TargetMiner: hsa-miR-141-3p
miRDB: MIMAT0000432