Mir-8-P2b

MirGeneDB ID

Cfa-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-141

Paralogues

Cfa-Mir-8-P1a Cfa-Mir-8-P1b Cfa-Mir-8-P2a Cfa-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cin-Mir-8-P2 Cja-Mir-8-P2b Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2b Isc-Mir-8 Laf-Mir-8-P2b Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2b Mmr-Mir-8-P2b Mmu-Mir-8-P2b Mom-Mir-8 Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2b Rph-Mir-8 Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(canFam3_add)

chr27: 38081675-38081739 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P2b chr27: 38081675-38081739 [-] UCSC Ensembl
Mir-8-P1b chr27: 38082097-38082159 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGAGCUGCACGUCCGCCGGCUCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAGUCACGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGCCGGUUCCCUCAGCAGUGACCUU

Get precursor sequence

Structure

        10          20        30          40        50        60 
CUGGAGCUGCACGUCCG--       U   U       --|   U          AUGGUCUAG 
                   CCGGCUC GGG CCAUCUU  CCAG ACAGUGUUGG         U
                   GGCCGGG CCC GGUAGAA  GGUC UGUCACAAUC         C
UUCCAGUGACGACUCCCUU       C   C       AU^   -          CUCGAAGCA 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-8-P2b_5p*

mirBase accession

None

Sequence

0- CAUCUUCCAGUACAGUGUUGGA -22

Get sequence

Mature sequence

Cfa-Mir-8-P2b_3p

mirBase accession

MIMAT0009876

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

Get sequence

Proposed targets

TargetScanVert: cfa-miR-141
miRDB: MIMAT0009876