Mir-8-P2b

MirGeneDB ID

Eca-Mir-8-P2b

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-141

Paralogues

Eca-Mir-8-P1a Eca-Mir-8-P1a-as Eca-Mir-8-P1b Eca-Mir-8-P2a Eca-Mir-8-P2a-as Eca-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2b Cin-Mir-8-P2 Cja-Mir-8-P2b Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2b Isc-Mir-8 Laf-Mir-8-P2b Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2b Mmr-Mir-8-P2b Mmu-Mir-8-P2b Mom-Mir-8 Npo-Mir-8 Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2b Rph-Mir-8 Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009153.1: 35439084-35439148 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2b)

Mir-8-P1b CM009153.1: 35438671-35438733 [+] UCSC Ensembl
Mir-8-P2b CM009153.1: 35439084-35439148 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGAGCUGCACGUCAGCCGGCUCUGGGUCCAUCUUCCAGUACAGUGUUGGAUGGUCUAAUUGUGAAGCUCCUAACACUGUCUGGUAAAGAUGGCCCCCGGGCCGGUUCCCUCGCCAAUGACCUU

Get precursor sequence

Structure

        10          20        30          40        50        60 
CUGGAGCUGCACGUCAG--       U   U       --|   U          AUGGUCUAA 
                   CCGGCUC GGG CCAUCUU  CCAG ACAGUGUUGG         U
                   GGCCGGG CCC GGUAGAA  GGUC UGUCACAAUC         U
UUCCAGUAACCGCUCCCUU       C   C       AU^   -          CUCGAAGUG 
   120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-8-P2b_5p*

mirBase accession

None

Sequence

0- CAUCUUCCAGUACAGUGUUGGA -22

Get sequence

Mature sequence

Eca-Mir-8-P2b_3p

mirBase accession

MIMAT0012970

Sequence

42- UAACACUGUCUGGUAAAGAUGGC -65

Get sequence