Mir-8-P1b

MirGeneDB ID

Eca-Mir-8-P1b

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-200c

Paralogues

Eca-Mir-8-P1a Eca-Mir-8-P1a-as Eca-Mir-8-P2a Eca-Mir-8-P2a-as Eca-Mir-8-P2b Eca-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1b Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1b Isc-Mir-8 Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P1b Mgi-Mir-8 Mml-Mir-8-P1b Mmr-Mir-8-P1b Mmu-Mir-8-P1b Mom-Mir-8 Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1b Rph-Mir-8 Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009153.1: 35438671-35438733 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1b)

Mir-8-P1b CM009153.1: 35438671-35438733 [+] UCSC Ensembl
Mir-8-P2b CM009153.1: 35439084-35439148 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGAGGGGGGCAGGCUGGGCGGGGGCCCCCGUCUUACCCAGCAGUGUUUGGGUGCUGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCUCUGUUCCUGUAUCAGCGACAUCCAU

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Structure

        10          20        30         40        50        60
UUGGAGGGGGGCAGGCU--           C     -|     A        U  GUGCUGG 
                   GGGCGGGGGCC CCGUC UUACCC GCAGUGUU GG       U
                   CUUGUCUCCGG GGUAG AAUGGG CGUCAUAA CU       U
UACCUACAGCGACUAUGUC           A     U^     C        U  CUGAGGG 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-8-P1b_5p*

mirBase accession

None

Sequence

0- CGUCUUACCCAGCAGUGUUUGG -22

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Mature sequence

Eca-Mir-8-P1b_3p

mirBase accession

MIMAT0012974

Sequence

40- UAAUACUGCCGGGUAAUGAUGGA -63

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