MirGeneDB 3.0

MirGeneDB ID

Dre-Mir-8-P1b

Family name MIR-8 (all species)
Seed AAUACUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-200c
Paralogues Dre-Mir-8-P1a  Dre-Mir-8-P2a  Dre-Mir-8-P2b  Dre-Mir-8-P3a  Dre-Mir-8-P3b 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1b  Cin-Mir-8-P1  Cja-Mir-8-P1b  Cpo-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P1b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1b  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1b  Isc-Mir-8  Laf-Mir-8-P1b  Lan-Mir-8  Lch-Mir-8-P1b  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mdo-Mir-8-P1b  Mgi-Mir-8  Mml-Mir-8-P1b  Mmr-Mir-8-P1b  Mmu-Mir-8-P1b  Mom-Mir-8  Neu-Mir-8-P1b  Npo-Mir-8  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1b  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1b  Rph-Mir-8  Sha-Mir-8-P1b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(danRer11)
chr6: 40656216-40656274 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1b)
Mir-8-P3b chr6: 40653151-40653208 [-] UCSC Ensembl
Mir-8-P2b chr6: 40656013-40656073 [-] UCSC Ensembl
Mir-8-P1b chr6: 40656216-40656274 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGGGAACGGACAAUGGAUGCCUGGCUCCAUCUUACAAGGCAGUUUUGGAUGUUAUAUCUUCUCUAAUACUGCCUGGUAAUGAUGCAGAUGGUCAUCUAGAGGCAACUUUGCAUCUG
Get precursor sequence
Structure
        10          20         30         40        50        
AUUUGGGAACGGACAAU--     -| UGG  C    -    A       U     UGUUA 
                   GGAUG CC   CU CAUC UUAC AGGCAGU UUGGA     U
                   UCUAC GG   GA GUAG AAUG UCCGUCA AAUCU     A
GUCUACGUUUCAACGGAGA     U^ UA-  C    U    G       U     CUUCU 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-8-P1b_5p*

mirBase accessionMIMAT0031986
Sequence
0- CAUCUUACAAGGCAGUUUUGGA -22
Get sequence
Mature sequence

Dre-Mir-8-P1b_3p

mirBase accessionMIMAT0001863
Sequence
36- UAAUACUGCCUGGUAAUGAUGCA -59
Get sequence
Proposed targets TargetScanFish: dre-miR-200c