MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-8-P1

Family name MIR-8 (all species)
Seed AAUACUG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-200
Paralogues Cin-Mir-8-P2 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P1a  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1a  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cfa-Mir-8-P1b  Cja-Mir-8-P1a  Cja-Mir-8-P1b  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Cpo-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Ebu-Mir-8-P1o1  Eca-Mir-8-P1a  Eca-Mir-8-P1a-as  Eca-Mir-8-P1b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Ete-Mir-8-P1b  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1a  Hsa-Mir-8-P1b  Isc-Mir-8  Laf-Mir-8-P1a  Laf-Mir-8-P1b  Lan-Mir-8  Lch-Mir-8-P1a  Lch-Mir-8-P1b  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mdo-Mir-8-P1b  Mgi-Mir-8  Mml-Mir-8-P1a  Mml-Mir-8-P1b  Mmr-Mir-8-P1a  Mmr-Mir-8-P1b  Mmu-Mir-8-P1a  Mmu-Mir-8-P1b  Mom-Mir-8  Mun-Mir-8-P1a  Neu-Mir-8-P1a  Neu-Mir-8-P1b  Npo-Mir-8  Oan-Mir-8-P1a  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1a  Ocu-Mir-8-P1b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1a  Pab-Mir-8-P1b  Pau-Mir-8  Pbv-Mir-8-P1a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pma-Mir-8-P1o2  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1a  Rno-Mir-8-P1b  Rph-Mir-8  Sha-Mir-8-P1a  Sha-Mir-8-P1b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xtr-Mir-8-P1a 
Node of Origin (locus) Chordata
Node of Origin (family) Nephrozoa
Genome context
(ci3)		 HT000325.1: 8346-8403 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1)		 Mir-8-P1 HT000325.1: 8346-8403 [+] UCSC Ensembl
Mir-8-P2 HT000325.1: 8710-8764 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUUUGUCGGAAAGUUUCGUGCCAACCGAAUCACCAACCACGUAGUAUCGGAGCAUUGUGUGUCUAAUACUGCCUGGUAAUGGUGAUUGGGUGGAUACGUACGAGCAGCAAUUAGCAC
Get precursor sequence
Structure
        10          20         30          40        50       
GCUUUGUCGGAAAGUUU--    -  A   G        --|   C       CG  GCAU 
                   CGUG CC ACC AAUCACCA  ACCA GUAGUAU  GA    U
                   GCAU GG UGG UUAGUGGU  UGGU CGUCAUA  CU    G
CACGAUUAACGACGAGCAU    A  -   G        AA^   C       AU  GUGU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-8-P1_5p*
mirBase accessionMIMAT0015263
Sequence 
0- UCACCAACCACGUAGUAUCGGA -22
Get sequence
Mature sequence

Cin-Mir-8-P1_3p
mirBase accessionMIMAT0006110
Sequence 
34- UAAUACUGCCUGGUAAUGGUGAUU -58
Get sequence