Mir-8-P2

MirGeneDB ID

Cin-Mir-8-P2

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Sea Squirt (Ciona intestinalis)

MiRBase ID

cin-mir-141

Paralogues

Cin-Mir-8-P1

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Bta-Mir-8-P2b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cfa-Mir-8-P2b Cja-Mir-8-P2a Cja-Mir-8-P2b Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Cpo-Mir-8-P2b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dno-Mir-8-P2b Dpu-Mir-8 Dre-Mir-8-P2a Dre-Mir-8-P2b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Ebu-Mir-8-P2o1 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Eca-Mir-8-P2b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Ete-Mir-8-P2b Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Hsa-Mir-8-P2b Isc-Mir-8 Laf-Mir-8-P2a Laf-Mir-8-P2b Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mdo-Mir-8-P2b Mgi-Mir-8 Mml-Mir-8-P2a Mml-Mir-8-P2b Mmr-Mir-8-P2a Mmr-Mir-8-P2b Mmu-Mir-8-P2a Mmu-Mir-8-P2b Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Oan-Mir-8-P2b Obi-Mir-8 Ocu-Mir-8-P2a Ocu-Mir-8-P2b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pab-Mir-8-P2b Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pma-Mir-8-P2o2 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rno-Mir-8-P2b Rph-Mir-8 Sha-Mir-8-P2a Sha-Mir-8-P2b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Chordata

Node of Origin (family)

Nephrozoa

Genome context
(ci3)

HT000325.1: 8710-8764 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2)

Mir-8-P1 HT000325.1: 8346-8403 [+] UCSC Ensembl
Mir-8-P2 HT000325.1: 8710-8764 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUGUUAGUAGUCGCUGACGCCCUGGUGUAUCUUGGUCAUAUAGUGUUGUAGAUUCAUGAUCUAACACUGUCUGGUAAAGAUGCAUUCGACGUGUCUCUUUCAACUUGAUUGUG

Get precursor sequence

Structure

        10         20         30        40        50        
UGUUGUUAGUAGUCGCU-     CCU-|         GG   U       UG    UUC 
                  GACGC    GGUGUAUCUU  UCA AUAGUGU  UAGA   \
                  CUGUG    UUACGUAGAA  GGU UGUCACA  AUCU   A
GUGUUAGUUCAACUUUCU     CAGC^         AU   C       --    AGU 
   110       100        90        80        70          60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

C-	C-	C-	C-	C-	C-	C-	C-	C-	C-	Ga	La	La

Star sequence

Cin-Mir-8-P2_5p*

mirBase accession

MIMAT0015260

Sequence

0- AUCUUGGUCAUAUAGUGUUGUAGA -24

Get sequence

Mature sequence

Cin-Mir-8-P2_3p

mirBase accession

MIMAT0006103

Sequence

33- UAACACUGUCUGGUAAAGAUGC -55

Get sequence