MirGeneDB 2.1
MirGeneDB ID

Cin-Mir-8-P2

Family name MIR-8 (all species)
Seed AACACUG
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-141
Paralogues Cin-Mir-8-P1 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Bta-Mir-8-P2b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cfa-Mir-8-P2b  Cgi-Mir-8  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Cpo-Mir-8-P2b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dno-Mir-8-P2b  Dpu-Mir-8  Dre-Mir-8-P2a  Dre-Mir-8-P2b  Dsi-Mir-8  Dya-Mir-8  Ebu-Mir-8-P2o1  Esc-Mir-8  Ete-Mir-8-P2a  Ete-Mir-8-P2b  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Hme-Mir-8  Hsa-Mir-8-P2a  Hsa-Mir-8-P2b  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mdo-Mir-8-P2b  Mml-Mir-8-P2a  Mml-Mir-8-P2b  Mmu-Mir-8-P2a  Mmu-Mir-8-P2b  Mun-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Oan-Mir-8-P2b  Obi-Mir-8  Ocu-Mir-8-P2a  Ocu-Mir-8-P2b  Ovu-Mir-8  Pbv-Mir-8-P2a  Pfl-Mir-8  Pma-Mir-8-P2o2  Pmi-Mir-8  Rno-Mir-8-P2a  Rno-Mir-8-P2b  Sha-Mir-8-P2a  Sha-Mir-8-P2b  Sko-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) Chordata
Node of Origin (family) Bilateria
Genome context
(ci3)		 HT000325.1: 8710-8764 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2)		 Mir-8-P1 HT000325.1: 8346-8403 [+] UCSC Ensembl
Mir-8-P2 HT000325.1: 8710-8764 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUGUUAGUAGUCGCUGACGCCCUGGUGUAUCUUGGUCAUAUAGUGUUGUAGAUUCAUGAUCUAACACUGUCUGGUAAAGAUGCAUUCGACGUGUCUCUUUCAACUUGAUUGUG
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Structure
        10         20         30        40        50        
UGUUGUUAGUAGUCGCU-     CCU-|         GG   U       UG    UUC 
                  GACGC    GGUGUAUCUU  UCA AUAGUGU  UAGA   \
                  CUGUG    UUACGUAGAA  GGU UGUCACA  AUCU   A
GUGUUAGUUCAACUUUCU     CAGC^         AU   C       --    AGU 
   110       100        90        80        70          60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cr Cr Cr Cr Cr Cr Cr Cr Cr Cr Ga La La
Star sequence

Cin-Mir-8-P2_5p*
mirBase accessionMIMAT0015260
Sequence 
0- AUCUUGGUCAUAUAGUGUUGUAGA -24
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Mature sequence

Cin-Mir-8-P2_3p
mirBase accessionMIMAT0006103
Sequence 
33- UAACACUGUCUGGUAAAGAUGC -55
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