Mir-8-P2a

MirGeneDB ID

Ami-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-200a

Paralogues

Ami-Mir-8-P1a Ami-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mml-Mir-8-P2a Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711487.1: 9499084-9499144 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P1a NW_017711487.1: 9496712-9496771 [+] UCSC
Mir-8-P2a NW_017711487.1: 9499084-9499144 [+] UCSC
Mir-8-P3a NW_017711487.1: 9503591-9503649 [+] UCSC

Precursor
(pre-Mir +30nt flank)

GUGGCUGGACAGACUAUGGUCCUCUGUGGGCAUCUUACUAGACAGUGCUGGAUAUUUUGGAUCUACUCUAACACUGUCUGGUAACGAUGUUUAAAGGGUGAACCAAACAACUACAUGCAUC

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Structure

        10         20         30         40        50         
GUGGCUGGACAGACUAUGG-  -    G        -|            C    UAUUUU 
                    UC CUCU UGGGCAUC UUACUAGACAGUG UGGA      G
                    AG GGGA AUUUGUAG AAUGGUCUGUCAC AUCU      G
CUACGUACAUCAACAAACCA  U    A        C^            A    CAUCUA 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ami-Mir-8-P2a_5p*

mirBase accession

MIMAT0038218

Sequence

0- CAUCUUACUAGACAGUGCUGGA -22

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Mature sequence

Ami-Mir-8-P2a_3p

mirBase accession

MIMAT0038219

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

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