MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-8-P2a

Family name MIR-8 (all species)
Seed AACACUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-200a
Paralogues Ami-Mir-8-P1a  Ami-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cgi-Mir-8  Cin-Mir-8-P2  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Hme-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mml-Mir-8-P2a  Mmu-Mir-8-P2a  Mun-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ocu-Mir-8-P2a  Ovu-Mir-8  Pbv-Mir-8-P2a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P2a  Sha-Mir-8-P2a  Sko-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711487.1: 9499084-9499144 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P2a)
Mir-8-P1a NW_017711487.1: 9496712-9496771 [+] UCSC
Mir-8-P2a NW_017711487.1: 9499084-9499144 [+] UCSC
Mir-8-P3a NW_017711487.1: 9503591-9503649 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GUGGCUGGACAGACUAUGGUCCUCUGUGGGCAUCUUACUAGACAGUGCUGGAUAUUUUGGAUCUACUCUAACACUGUCUGGUAACGAUGUUUAAAGGGUGAACCAAACAACUACAUGCAUC
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Structure
        10         20         30         40        50         
GUGGCUGGACAGACUAUGG-  -    G        -|            C    UAUUUU 
                    UC CUCU UGGGCAUC UUACUAGACAGUG UGGA      G
                    AG GGGA AUUUGUAG AAUGGUCUGUCAC AUCU      G
CUACGUACAUCAACAAACCA  U    A        C^            A    CAUCUA 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Ami-Mir-8-P2a_5p*

mirBase accessionMIMAT0038218
Sequence
0- CAUCUUACUAGACAGUGCUGGA -22
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Mature sequence

Ami-Mir-8-P2a_3p

mirBase accessionMIMAT0038219
Sequence
38- UAACACUGUCUGGUAACGAUGUU -61
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