MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-8-P2a1

Family name MIR-8 (all species)
Seed AACACUG
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-200a-2
Paralogues Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xla-Mir-8-P2a2  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cin-Mir-8-P2  Cja-Mir-8-P2a  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P2a  Eca-Mir-8-P2a-as  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Laf-Mir-8-P2a  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mgi-Mir-8  Mml-Mir-8-P2a  Mmr-Mir-8-P2a  Mmu-Mir-8-P2a  Mom-Mir-8  Mun-Mir-8-P2a  Neu-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ocu-Mir-8-P2a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P2a  Pau-Mir-8  Pbv-Mir-8-P2a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P2a  Rph-Mir-8  Sha-Mir-8-P2a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Tur-Mir-8  War-Mir-8  Xtr-Mir-8-P2a 
Node of Origin (locus) X. laevis
Node of Origin (family) Nephrozoa
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030736.1: 81489807-81489867 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2a1)		 Mir-8-P3a1 NC_030736.1: 81487076-81487134 [-] UCSC Ensembl
Mir-8-P2a1 NC_030736.1: 81489807-81489867 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCCUUUGCAGAAGCCUGGUCCUCUAUGGACAUCUUACUAGACAGUGCUGGAUUUAUUUUAUGUUUUCUAACACUGUCUGGUAACGAUGUUUAAAGUGUGAGCCAACAUACUCCGUGUUCC
Get precursor sequence
Structure
        10         20         30         40        50         
CUCCUUUGCAGAAGCCUGG-  CU-  A        -|            C    UUUAUU 
                    UC   CU UGGACAUC UUACUAGACAGUG UGGA      U
                    AG   GA AUUUGUAG AAUGGUCUGUCAC AUCU      U
CCUUGUGCCUCAUACAACCG  UGU  A        C^            A    UUUGUA 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Em
Star sequence

Xla-Mir-8-P2a1_5p*
mirBase accessionMIMAT0046518
Sequence 
0- CAUCUUACUAGACAGUGCUGGA -22
Get sequence
Mature sequence

Xla-Mir-8-P2a1_3p
mirBase accessionMIMAT0046519
Sequence 
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence