Mir-8-P2a

MirGeneDB ID

Gga-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-200a

Paralogues

Gga-Mir-8-P1a Gga-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mml-Mir-8-P2a Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gallus_gallus.GRCg6a)

21: 2601082-2601142 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P3a 21: 2598575-2598633 [-] UCSC Ensembl
Mir-8-P2a 21: 2601082-2601142 [-] UCSC Ensembl
Mir-8-P1a 21: 2603411-2603470 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGCUGGACAGACAGUGGUCCUCUGUGGGCAUCUUACUAGACAGUGCUGGAUUUCUUGGAUCUAUUCUAACACUGUCUGGUAACGAUGUUUAAAGGGUGAACCAAACAACACCAUGCAUC

Get precursor sequence

Structure

        10         20         30         40        50         
GCUGCUGGACAGACAGUGG-  -    G        -|            C    UUUCUU 
                    UC CUCU UGGGCAUC UUACUAGACAGUG UGGA      G
                    AG GGGA AUUUGUAG AAUGGUCUGUCAC AUCU      G
CUACGUACCACAACAAACCA  U    A        C^            A    UAUCUA 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-8-P2a_5p*

mirBase accession

MIMAT0026533

Sequence

0- CAUCUUACUAGACAGUGCUGGA -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-200a-5p
miRDB: MIMAT0026533

Mature sequence

Gga-Mir-8-P2a_3p

mirBase accession

MIMAT0001171

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

Get sequence

Proposed targets

TargetScanVert: gga-miR-200a-3p
miRDB: MIMAT0001171