Mir-8-P3a

MirGeneDB ID

Gga-Mir-8-P3a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-429

Paralogues

Gga-Mir-8-P1a Gga-Mir-8-P2a

Orthologues

Aae-Mir-8 Aca-Mir-8-P3a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P3a Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Bta-Mir-8-P3a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P3a Cja-Mir-8-P3a Cli-Mir-8-P3a Cmi-Mir-8-P3a Cpi-Mir-8-P3a Cpo-Mir-8-P3a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P3a Dpu-Mir-8 Dre-Mir-8-P3a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P3a Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P3a Gja-Mir-8-P3a Gmo-Mir-8-P3a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P3a Isc-Mir-8 Laf-Mir-8-P3a Lan-Mir-8 Lch-Mir-8-P3a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P3a Mal-Mir-8-P3a Mdo-Mir-8-P3a Mgi-Mir-8 Mml-Mir-8-P3a Mmr-Mir-8-P3a Mmu-Mir-8-P3a Mom-Mir-8 Mun-Mir-8-P3a Neu-Mir-8-P3a Npo-Mir-8 Oan-Mir-8-P3a Obi-Mir-8 Ocu-Mir-8-P3a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P3a Pau-Mir-8 Pbv-Mir-8-P3a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P3a Rph-Mir-8 Sha-Mir-8-P3a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P3a Spu-Mir-8 Sto-Mir-8-P3a Tca-Mir-8 Tni-Mir-8-P3a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P3a1 Xla-Mir-8-P3a2 Xtr-Mir-8-P3a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gallus_gallus.GRCg6a)

21: 2598575-2598633 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3a)

Mir-8-P3a 21: 2598575-2598633 [-] UCSC Ensembl
Mir-8-P2a 21: 2601082-2601142 [-] UCSC Ensembl
Mir-8-P1a 21: 2603411-2603470 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCCUUUAGCCUGAGCGCCUGCUGAUUGCUGUCUUACCAGGCAAAGUUAGAUCUAGCUAUUUCUGUCUAAUACUGUCUGGUAAUGCCGUCAAUCGCAUGGGCAAAAGUCUUCGCCUUGA

Get precursor sequence

Structure

        10           20         30        40        50        
UUCCUUUAGCCUGAGCG--  -|  U     - U  C          AA      UCUAGC 
                   CC UGC GAUUG C GU UUACCAGGCA  GUUAGA      U
                   GG ACG CUAAC G CG AAUGGUCUGU  UAAUCU      A
AGUUCCGCUUCUGAAAACG  U^  -     U C  U          CA      GUCUUU 
       110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Star sequence

Gga-Mir-8-P3a_5p*

mirBase accession

MIMAT0026635

Sequence

0- GUCUUACCAGGCAAAGUUAGA -21

Get sequence

Proposed targets

TargetScanVert: gga-miR-429-5p
miRDB: MIMAT0026635

Mature sequence

Gga-Mir-8-P3a_3p

mirBase accession

MIMAT0003371

Sequence

37- UAAUACUGUCUGGUAAUGCCGU -59

Get sequence

Proposed targets

TargetScanVert: gga-miR-429-3p
miRDB: MIMAT0003371