MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-8-P3a

Family name MIR-8 (all species)
Seed AAUACUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-429a
Paralogues Dre-Mir-8-P1a  Dre-Mir-8-P1b  Dre-Mir-8-P2a  Dre-Mir-8-P2b  Dre-Mir-8-P3b 
Orthologues Aae-Mir-8  Aca-Mir-8-P3a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P3a  Asu-Mir-8  Bfl-Mir-8-P3  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P3  Bpl-Mir-8  Bta-Mir-8-P3a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P3a  Cja-Mir-8-P3a  Cli-Mir-8-P3a  Cmi-Mir-8-P3a  Cpi-Mir-8-P3a  Cpo-Mir-8-P3a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P3a  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P3a  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P3a  Gga-Mir-8-P3a  Gja-Mir-8-P3a  Gmo-Mir-8-P3a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P3a  Isc-Mir-8  Laf-Mir-8-P3a  Lan-Mir-8  Lch-Mir-8-P3a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P3a  Mal-Mir-8-P3a  Mdo-Mir-8-P3a  Mgi-Mir-8  Mml-Mir-8-P3a  Mmr-Mir-8-P3a  Mmu-Mir-8-P3a  Mom-Mir-8  Mun-Mir-8-P3a  Neu-Mir-8-P3a  Npo-Mir-8  Oan-Mir-8-P3a  Obi-Mir-8  Ocu-Mir-8-P3a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P3a  Pau-Mir-8  Pbv-Mir-8-P3a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P3a  Rph-Mir-8  Sha-Mir-8-P3a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P3a  Spu-Mir-8  Sto-Mir-8-P3a  Tca-Mir-8  Tni-Mir-8-P3a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2  Xtr-Mir-8-P3a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(danRer11)		 chr23: 24073828-24073886 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P3a)		 Mir-8-P1a chr23: 24072041-24072100 [+] UCSC Ensembl
Mir-8-P2a chr23: 24072173-24072233 [+] UCSC Ensembl
Mir-8-P3a chr23: 24073828-24073886 [+] UCSC Ensembl
Mir-7149 chr23: 24074089-24074151 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUCACAGAGUCAGGCUUGUUGAUGGACGUCUUACCAGACAUGGUUAGAUGUAAUAACUUGUGUCUAAUACUGUCUGGUAAUGCCGUCCAUCACAUGCUAAUGCCGUCAUGGUCCUU
Get precursor sequence
Structure
        10           20        30         40        50        
GUUGUCACAGAGUCAGGCU---|  U        - C          UG      UGUAAU 
                      UGU GAUGGACG U UUACCAGACA  GUUAGA      A
                      ACA CUACCUGC G AAUGGUCUGU  UAAUCU      A
UUCCUGGUACUGCCGUAAUCGU^  -        C U          CA      GUGUUC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-8-P3a_5p*
mirBase accessionNone
Sequence 
0- GUCUUACCAGACAUGGUUAGA -21
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Mature sequence

Dre-Mir-8-P3a_3p
mirBase accessionMIMAT0001624
Sequence 
37- UAAUACUGUCUGGUAAUGCCGU -59
Get sequence
Proposed targets TargetScanFish: dre-miR-429