MirGeneDB 3.0
MirGeneDB ID

Cpo-Mir-8-P3a

Family name MIR-8 (all species)
Seed AAUACUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-429
Paralogues Cpo-Mir-8-P1a  Cpo-Mir-8-P1b  Cpo-Mir-8-P2a  Cpo-Mir-8-P2b 
Orthologues Aae-Mir-8  Aca-Mir-8-P3a  Aga-Mir-8  Agr-Mir-8  Ami-Mir-8-P3a  Asu-Mir-8  Bfl-Mir-8-P3  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P3  Bpl-Mir-8  Bta-Mir-8-P3a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P3a  Cja-Mir-8-P3a  Cli-Mir-8-P3a  Cmi-Mir-8-P3a  Cpi-Mir-8-P3a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P3a  Dpu-Mir-8  Dre-Mir-8-P3a  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P3a  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P3a  Gga-Mir-8-P3a  Gja-Mir-8-P3a  Gmo-Mir-8-P3a  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P3a  Isc-Mir-8  Laf-Mir-8-P3a  Lan-Mir-8  Lch-Mir-8-P3a  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Loc-Mir-8-P3a  Mal-Mir-8-P3a  Mdo-Mir-8-P3a  Mgi-Mir-8  Mml-Mir-8-P3a  Mmr-Mir-8-P3a  Mmu-Mir-8-P3a  Mom-Mir-8  Mun-Mir-8-P3a  Neu-Mir-8-P3a  Npo-Mir-8  Oan-Mir-8-P3a  Obi-Mir-8  Ocu-Mir-8-P3a  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P3a  Pau-Mir-8  Pbv-Mir-8-P3a  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P3a  Rph-Mir-8  Sha-Mir-8-P3a  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spt-Mir-8-P3a  Spu-Mir-8  Sto-Mir-8-P3a  Tca-Mir-8  Tni-Mir-8-P3a  Tur-Mir-8  War-Mir-8  Xla-Mir-8-P3a1  Xla-Mir-8-P3a2  Xtr-Mir-8-P3a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(cavPor3)		 scaffold_186: 1148974-1149032 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-8-P3a)		 Mir-8-P3a scaffold_186: 1148974-1149032 [-] UCSC
Mir-8-P2a scaffold_186: 1149699-1149759 [-] UCSC
Mir-8-P1a scaffold_186: 1150409-1150467 [-] UCSC
Precursor
(pre-Mir +30nt flank)
CAGCAGGACCCAUGCUCGCCCACGAUGGGCGUCUUACCAGACACGGUUAGAUCUGGAUGCUUCUGUCUAAUACUGUCUGGUAAUGCCGUCCAUCCACGGCCUGGUCACCGCGGGAGCAG
Get precursor sequence
Structure
        10          20        30         40        50        
CAGCAGGACCCAUGCUC--   CAC       -| C          CG      UCUGGA 
                   GCC   GAUGGGC GU UUACCAGACA  GUUAGA      U
                   CGG   CUACCUG CG AAUGGUCUGU  UAAUCU      G
GACGAGGGCGCCACUGGUC   CAC       C^ U          CA      GUCUUC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Star sequence

Cpo-Mir-8-P3a_5p* (predicted)
mirBase accessionMIMAT0047247
Sequence 
0- GUCUUACCAGACACGGUUAGA -21
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Mature sequence

Cpo-Mir-8-P3a_3p
mirBase accessionMIMAT0047248
Sequence 
37- UAAUACUGUCUGGUAAUGCCGU -59
Get sequence