Mir-8-P2a

MirGeneDB ID

Rno-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-200a

Paralogues

Rno-Mir-8-P1a Rno-Mir-8-P1b Rno-Mir-8-P2b Rno-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mml-Mir-8-P2a Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(rn6)

chr5: 173489379-173489439 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P3a chr5: 173488342-173488400 [-] UCSC Ensembl
Mir-8-P2a chr5: 173489379-173489439 [-] UCSC Ensembl
Mir-8-P1a chr5: 173490160-173490218 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCUACCAAAGCAUACCUGGGCCUCUGUGGGCAUCUUACCGGACAGUGCUGGAUUUCUUGGCUUGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCAACACUCGCCGAAGACAG

Get precursor sequence

Structure

        10         20         30         40        50         
CCUACCAAAGCAUACCU-   CC-   G        -|            C    UUUCUU 
                  GGG   UCU UGGGCAUC UUACCGGACAGUG UGGA      G
                  CCC   GGA ACUUGUAG AAUGGUCUGUCAC AUCU      G
GACAGAAGCCGCUCACAA   AGU   A        C^            A    CAGUUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-8-P2a_5p*

mirBase accession

MIMAT0017151

Sequence

0- CAUCUUACCGGACAGUGCUGGA -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-200a-5p
miRDB: MIMAT0017151

Mature sequence

Rno-Mir-8-P2a_3p

mirBase accession

MIMAT0000874

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

Get sequence

Proposed targets

microrna.org: MIMAT0000874
TargetScanVert: rno-miR-200a-3p
miRDB: MIMAT0000874