MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-8-P2a

Family name MIR-8 (all species)
Seed AACACUG
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-200a
Paralogues Mmu-Mir-8-P1a  Mmu-Mir-8-P1b  Mmu-Mir-8-P2b  Mmu-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P2a  Ami-Mir-8-P2a  Asu-Mir-8  Bfl-Mir-8-P2  Bge-Mir-8  Bla-Mir-8-P2  Bpl-Mir-8  Bta-Mir-8-P2a  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P2a  Cgi-Mir-8  Cin-Mir-8-P2  Cli-Mir-8-P2a  Cmi-Mir-8-P2a  Cpi-Mir-8-P2a  Cpo-Mir-8-P2a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P2a  Dpu-Mir-8  Dre-Mir-8-P2a  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P2a  Gga-Mir-8-P2a  Gja-Mir-8-P2a  Gmo-Mir-8-P2a  Hme-Mir-8  Hsa-Mir-8-P2a  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P2a  Lgi-Mir-8  Loc-Mir-8-P2a  Mal-Mir-8-P2a  Mdo-Mir-8-P2a  Mml-Mir-8-P2a  Mun-Mir-8-P2a  Npo-Mir-8  Oan-Mir-8-P2a  Obi-Mir-8  Ocu-Mir-8-P2a  Ovu-Mir-8  Pbv-Mir-8-P2a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P2a  Sha-Mir-8-P2a  Sko-Mir-8  Spt-Mir-8-P2a  Spu-Mir-8  Sto-Mir-8-P2a  Tca-Mir-8  Tgu-Mir-8-P2a  Tni-Mir-8-P2a  Xla-Mir-8-P2a1  Xla-Mir-8-P2a2  Xtr-Mir-8-P2a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(mm10)
chr4: 156054910-156054970 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P2a)
Mir-8-P3a chr4: 156053916-156053974 [-] UCSC Ensembl
Mir-8-P2a chr4: 156054910-156054970 [-] UCSC Ensembl
Mir-8-P1a chr4: 156055684-156055742 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGCCAGAGCAUACCUGGGCCUCUGUGGGCAUCUUACCGGACAGUGCUGGAUUUCUUGGCUUGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCACCAUUCGCCGAAGACAG
Get precursor sequence
Structure
        10         20         30         40        50         
CCUGCCAGAGCAUACCU-   CC-   G        -|            C    UUUCUU 
                  GGG   UCU UGGGCAUC UUACCGGACAGUG UGGA      G
                  CCC   GGA ACUUGUAG AAUGGUCUGUCAC AUCU      G
GACAGAAGCCGCUUACCA   AGU   A        C^            A    CAGUUC 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt Wt
Star sequence

Mmu-Mir-8-P2a_5p*

mirBase accessionMIMAT0004619
Sequence
0- CAUCUUACCGGACAGUGCUGGA -22
Get sequence
Proposed targets microrna.org: MIMAT0004619
TargetScanVert: mmu-miR-200a-5p
miRDB: MIMAT0004619
Mature sequence

Mmu-Mir-8-P2a_3p

mirBase accessionMIMAT0000519
Sequence
38- UAACACUGUCUGGUAACGAUGUU -61
Get sequence
Proposed targets microrna.org: MIMAT0000519
TargetScanVert: mmu-miR-200a-3p
miRDB: MIMAT0000519