Mir-8-P2a

MirGeneDB ID

Eca-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-200a

Paralogues

Eca-Mir-8-P1a Eca-Mir-8-P1a-as Eca-Mir-8-P1b Eca-Mir-8-P2a-as Eca-Mir-8-P2b Eca-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mml-Mir-8-P2a Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 48713816-48713876 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P3a CM009149.1: 48712427-48712485 [-] UCSC Ensembl
Mir-8-P2a CM009149.1: 48713816-48713876 [-] UCSC Ensembl
Mir-8-P2a-as CM009149.1: 48713818-48713878 [+] UCSC Ensembl
Mir-8-P1a CM009149.1: 48714471-48714528 [-] UCSC Ensembl
Mir-8-P1a-as CM009149.1: 48714474-48714529 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCAGGCUGAGGCGCCUGGGCCCCUGUGGGCAUCUUACCGGACAGUGCUGGAUUUCUCGGCUCGACUCUAACACUGUCUGGUAACGAUGUUCAAAGGUGACCCACUGCCGCCCGCUGGGGA

Get precursor sequence

Structure

        10         20         30         40        50         
CUCAGGCUGAGGCGCCU-   CC-   G        -|            C    UUUCUC 
                  GGG   CCU UGGGCAUC UUACCGGACAGUG UGGA      G
                  CCC   GGA ACUUGUAG AAUGGUCUGUCAC AUCU      G
AGGGGUCGCCCGCCGUCA   AGU   A        C^            A    CAGCUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-8-P2a_5p*

mirBase accession

None

Sequence

0- CAUCUUACCGGACAGUGCUGGA -22

Get sequence

Mature sequence

Eca-Mir-8-P2a_3p

mirBase accession

MIMAT0012909

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

Get sequence