Mir-8-P1a

MirGeneDB ID

Eca-Mir-8-P1a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-200b

Paralogues

Eca-Mir-8-P1a-as Eca-Mir-8-P1b Eca-Mir-8-P2a Eca-Mir-8-P2a-as Eca-Mir-8-P2b Eca-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cin-Mir-8-P1 Cja-Mir-8-P1a Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1a Isc-Mir-8 Laf-Mir-8-P1a Lan-Mir-8 Lch-Mir-8-P1a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mgi-Mir-8 Mml-Mir-8-P1a Mmr-Mir-8-P1a Mmu-Mir-8-P1a Mom-Mir-8 Mun-Mir-8-P1a Neu-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pau-Mir-8 Pbv-Mir-8-P1a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1a Rph-Mir-8 Sha-Mir-8-P1a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(GCA_002863925.1_EquCab3.0)

CM009149.1: 48714471-48714528 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1a)

Mir-8-P3a CM009149.1: 48712427-48712485 [-] UCSC Ensembl
Mir-8-P2a CM009149.1: 48713816-48713876 [-] UCSC Ensembl
Mir-8-P2a-as CM009149.1: 48713818-48713878 [+] UCSC Ensembl
Mir-8-P1a CM009149.1: 48714471-48714528 [-] UCSC Ensembl
Mir-8-P1a-as CM009149.1: 48714474-48714529 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCCCAGACCCACCUCGGGGCGGCCGUCGCCAUCUUACUGGGCAGCAUUGGAUGUGUCUGGUCUCUAAUACUGCCUGGUAAUGAUGACGGCGGGGCCCUGCACGCAGCCAGGGGGCCG

Get precursor sequence

Structure

        10           20        30         40        50        
GCCCCAGACCCACCUCG---|   GG      C    -    UG     C      UGUGU 
                    GGGC  CCGUCG CAUC UUAC  GGCAG AUUGGA     \
                    CCCG  GGCGGC GUAG AAUG  CCGUC UAAUCU     C
GCCGGGGGACCGACGCACGU^   G-      A    U    GU     A      CUGGU 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-8-P1a_5p*

mirBase accession

None

Sequence

0- CAUCUUACUGGGCAGCAUUGGA -22

Get sequence

Mature sequence

Eca-Mir-8-P1a_3p

mirBase accession

MIMAT0012910

Sequence

35- UAAUACUGCCUGGUAAUGAUGAC -58

Get sequence