Mir-8-P1a

MirGeneDB ID

Rno-Mir-8-P1a

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-200b

Paralogues

Rno-Mir-8-P1b Rno-Mir-8-P2a Rno-Mir-8-P2b Rno-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P1a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P1a Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1a Cin-Mir-8-P1 Cja-Mir-8-P1a Cli-Mir-8-P1a Cmi-Mir-8-P1a Cpi-Mir-8-P1a Cpo-Mir-8-P1a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P1a Dpu-Mir-8 Dre-Mir-8-P1a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1a Eca-Mir-8-P1a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1a Gga-Mir-8-P1a Gja-Mir-8-P1a Gmo-Mir-8-P1a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1a Isc-Mir-8 Laf-Mir-8-P1a Lan-Mir-8 Lch-Mir-8-P1a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P1a Mal-Mir-8-P1a Mdo-Mir-8-P1a Mgi-Mir-8 Mml-Mir-8-P1a Mmr-Mir-8-P1a Mmu-Mir-8-P1a Mom-Mir-8 Mun-Mir-8-P1a Neu-Mir-8-P1a Npo-Mir-8 Oan-Mir-8-P1a Obi-Mir-8 Ocu-Mir-8-P1a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1a Pau-Mir-8 Pbv-Mir-8-P1a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sha-Mir-8-P1a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P1a Spu-Mir-8 Sto-Mir-8-P1a Tca-Mir-8 Tgu-Mir-8-P1a Tni-Mir-8-P1a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P1a1 Xla-Mir-8-P1a2 Xtr-Mir-8-P1a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(rn6)

chr5: 173490160-173490218 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1a)

Mir-8-P3a chr5: 173488342-173488400 [-] UCSC Ensembl
Mir-8-P2a chr5: 173489379-173489439 [-] UCSC Ensembl
Mir-8-P1a chr5: 173490160-173490218 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUCCAUAUCCAACUUGGGCAGCCGUGGCCAUCUUACUGGGCAGCAUUGGAUAGUGUCUGAUCUCUAAUACUGCCUGGUAAUGAUGACGGCGGAGCCCUGCACGCAGCAAUGGAGCCG

Get precursor sequence

Structure

        10           20          30         40        50        
GCCUCCAUAUCCAACUU---    A--|    GGC    -    UG     C      UAGUG 
                    GGGC   GCCGU   CAUC UUAC  GGCAG AUUGGA     U
                    CCCG   CGGCA   GUAG AAUG  CCGUC UAAUCU     C
GCCGAGGUAACGACGCACGU    AGG^    ---    U    GU     A      CUAGU 
       110       100        90           80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-8-P1a_5p*

mirBase accession

MIMAT0017152

Sequence

0- CAUCUUACUGGGCAGCAUUGGA -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-200b-5p
miRDB: MIMAT0017152

Mature sequence

Rno-Mir-8-P1a_3p

mirBase accession

MIMAT0000875

Sequence

36- UAAUACUGCCUGGUAAUGAUGAC -59

Get sequence

Proposed targets

microrna.org: MIMAT0000875
TargetScanVert: rno-miR-200b-3p
miRDB: MIMAT0000875