Mir-8-P1b

MirGeneDB ID

Rno-Mir-8-P1b

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-200c

Paralogues

Rno-Mir-8-P1a Rno-Mir-8-P2a Rno-Mir-8-P2b Rno-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1b Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P1b Isc-Mir-8 Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P1b Mgi-Mir-8 Mml-Mir-8-P1b Mmr-Mir-8-P1b Mmu-Mir-8-P1b Mom-Mir-8 Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(rn6)

chr4: 157236788-157236850 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1b)

Mir-8-P2b chr4: 157236360-157236424 [-] UCSC Ensembl
Mir-8-P1b chr4: 157236788-157236850 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUGAAGGUGGACUGGUUGGGUAGGGGCCCUCGUCUUACCCAGCAGUGUUUGGGUGCUGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCCCUGCCCCUGUGUCAUCGGCGUCCAU

Get precursor sequence

Structure

        10          20        30         40        50        60
CUGAAGGUGGACUGGUU--           CU    -|     A        U  GUGCUGG 
                   GGGUAGGGGCC  CGUC UUACCC GCAGUGUU GG       U
                   CCCGUCCCCGG  GUAG AAUGGG CGUCAUAA CU       U
UACCUGCGGCUACUGUGUC           AG    U^     C        U  CUGAGGG 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-8-P1b_5p*

mirBase accession

MIMAT0017150

Sequence

0- CGUCUUACCCAGCAGUGUUUGG -22

Get sequence

Proposed targets

TargetScanVert: rno-miR-200c-5p
miRDB: MIMAT0017150

Mature sequence

Rno-Mir-8-P1b_3p

mirBase accession

MIMAT0000873

Sequence

40- UAAUACUGCCGGGUAAUGAUGGA -63

Get sequence

Proposed targets

microrna.org: MIMAT0000873
TargetScanVert: rno-miR-200c-3p
miRDB: MIMAT0000873