MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-8-P1b

Family name MIR-8 (all species)
Seed AAUACUG
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-200c
Paralogues Mdo-Mir-8-P1a  Mdo-Mir-8-P2a  Mdo-Mir-8-P2b  Mdo-Mir-8-P3a 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Bta-Mir-8-P1b  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1b  Cin-Mir-8-P1  Cja-Mir-8-P1b  Cpo-Mir-8-P1b  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dre-Mir-8-P1b  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Eca-Mir-8-P1b  Egr-Mir-8  Esc-Mir-8  Ete-Mir-8-P1b  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Hsa-Mir-8-P1b  Isc-Mir-8  Laf-Mir-8-P1b  Lan-Mir-8  Lch-Mir-8-P1b  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mgi-Mir-8  Mml-Mir-8-P1b  Mmr-Mir-8-P1b  Mmu-Mir-8-P1b  Mom-Mir-8  Neu-Mir-8-P1b  Npo-Mir-8  Oan-Mir-8-P1b  Obi-Mir-8  Ocu-Mir-8-P1b  Ofu-Mir-8  Ovu-Mir-8  Pab-Mir-8-P1b  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rno-Mir-8-P1b  Rph-Mir-8  Sha-Mir-8-P1b  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) Vertebrata
Node of Origin (family) Nephrozoa
Genome context
(monDom5_add)		 8: 108475452-108475514 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1b)		 Mir-8-P1b 8: 108475452-108475514 [+] UCSC Ensembl
Mir-8-P2b 8: 108475865-108475921 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGAGUGCGGCUGGCCGGGACUGGCGCCCCAUCUUACCCAGCAGUGUUUGGGUGCCGCUCGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGUCCUUUCCUCAUGACGCCUCCCAAUGCC
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Structure
        10          20         30         40        50        60
CUCGAGUGCGGCUGGCC--    CU  C   -     -|     A        U  GUGCCGC 
                   GGGA  GG GCC CCAUC UUACCC GCAGUGUU GG       U
                   UCCU  CC UGG GGUAG AAUGGG CGUCAUAA CU       C
CCGUAACCCUCCGCAGUAC    UU  -   A     U^     C        U  CUGAGGG 
 120       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Ce He Ki Te
Star sequence

Mdo-Mir-8-P1b_5p*
mirBase accessionMIMAT0026694
Sequence 
0- CAUCUUACCCAGCAGUGUUUGG -22
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Proposed targets TargetScanVert: mdo-miR-200c-5p
Mature sequence

Mdo-Mir-8-P1b_3p
mirBase accessionMIMAT0004150
Sequence 
40- UAAUACUGCCGGGUAAUGAUGGA -63
Get sequence
Proposed targets TargetScanVert: mdo-miR-200c-3p