MirGeneDB ID | Ete-Mir-8-P1b |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Lesser hedgehog tenrec (Echinops telfairi) |
MiRBase ID |
|
Paralogues |
Ete-Mir-8-P1a
Ete-Mir-8-P2a
Ete-Mir-8-P2b
Ete-Mir-8-P3a
|
Orthologues |
Aae-Mir-8
Asu-Mir-8
Bfl-Mir-8-P1-v1
Bfl-Mir-8-P1-v2
Bge-Mir-8
Bla-Mir-8-P1
Bpl-Mir-8
Bta-Mir-8-P1b
Cbr-Mir-8
Cel-Mir-8
Cfa-Mir-8-P1b
Cgi-Mir-8
Cin-Mir-8-P1
Cpo-Mir-8-P1b
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dpu-Mir-8
Dre-Mir-8-P1b
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Hme-Mir-8
Hsa-Mir-8-P1b
Isc-Mir-8
Lan-Mir-8
Lch-Mir-8-P1b
Lgi-Mir-8
Mdo-Mir-8-P1b
Mml-Mir-8-P1b
Mmu-Mir-8-P1b
Npo-Mir-8
Oan-Mir-8-P1b
Obi-Mir-8
Ocu-Mir-8-P1b
Ovu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Rno-Mir-8-P1b
Sha-Mir-8-P1b
Sko-Mir-8
Spu-Mir-8
Tca-Mir-8
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (echTel2) |
JH980323: 28885348-28885410 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
CUGGAGGUGGGCAGGCUGGGUGGGGGCCCUCGUCUUACCCAGCAGUGUUUGGGUGCUGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCCCUGUUCUGUGUCAGCGGCAGCCAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGGAGGUGGGCAGGCU-- UG CU -| A U GUGCUGG
GGG GGGGCC CGUC UUACCC GCAGUGUU GG U
CUU CCCCGG GUAG AAUGGG CGUCAUAA CU U
GUACCGACGGCGACUGUGU GU AG U^ C U CUGAGGG
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ete-Mir-8-P1b_5p* |
mirBase accession | None |
Sequence |
0- CGUCUUACCCAGCAGUGUUUGG -22
Get sequence
|
Mature sequence |
Ete-Mir-8-P1b_3p |
mirBase accession | None |
Sequence |
40- UAAUACUGCCGGGUAAUGAUGGA -63
Get sequence
|