Mir-8-P1b

MirGeneDB ID

Hsa-Mir-8-P1b

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-200c

Paralogues

Hsa-Mir-8-P1a Hsa-Mir-8-P2a Hsa-Mir-8-P2b Hsa-Mir-8-P3a

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P1-v1 Bfl-Mir-8-P1-v2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P1 Bpl-Mir-8 Bta-Mir-8-P1b Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P1b Cin-Mir-8-P1 Cja-Mir-8-P1b Cpo-Mir-8-P1b Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dre-Mir-8-P1b Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P1b Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P1b Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Laf-Mir-8-P1b Lan-Mir-8 Lch-Mir-8-P1b Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mdo-Mir-8-P1b Mgi-Mir-8 Mml-Mir-8-P1b Mmr-Mir-8-P1b Mmu-Mir-8-P1b Mom-Mir-8 Neu-Mir-8-P1b Npo-Mir-8 Oan-Mir-8-P1b Obi-Mir-8 Ocu-Mir-8-P1b Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P1b Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P1b Rph-Mir-8 Sha-Mir-8-P1b Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(hg38)

chr12: 6963703-6963764 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P1b)

Mir-8-P1b chr12: 6963703-6963764 [+] UCSC Ensembl
Mir-8-P2b chr12: 6964113-6964177 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCAAGGUGGGCGGGCUGGGCGGGGGCCCUCGUCUUACCCAGCAGUGUUUGGGUGCGGUUGGGAGUCUCUAAUACUGCCGGGUAAUGAUGGAGGCCCCUGUCCCUGUGUCAGCAACAUCCAU

Get precursor sequence

Structure

        10          20        30         40        50          
CCCAAGGUGGGCGGGCU--           CU    -|     A        U  GUGCGGU 
                   GGGCGGGGGCC  CGUC UUACCC GCAGUGUU GG       \
                   CCUGUCCCCGG  GUAG AAUGGG CGUCAUAA CU       U
UACCUACAACGACUGUGUC           AG    U^     C        U  CUGAGGG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Star sequence

Hsa-Mir-8-P1b_5p*

mirBase accession

MIMAT0004657

Sequence

0- CGUCUUACCCAGCAGUGUUUGG -22

Get sequence

Proposed targets

microrna.org: MIMAT0004657
TargetScanVert: hsa-miR-200c-5p
TargetMiner: hsa-miR-200c-5p
miRDB: MIMAT0004657

Mature sequence

Hsa-Mir-8-P1b_3p

mirBase accession

MIMAT0000617

Sequence

39- UAAUACUGCCGGGUAAUGAUGGA -62

Get sequence

Proposed targets

microrna.org: MIMAT0000617
TargetScanVert: hsa-miR-200c-3p
TargetMiner: hsa-miR-200c-3p
miRDB: MIMAT0000617