MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-8-P1a

Family name MIR-8 (all species)
Seed AAUACUG
Species Cow (Bos taurus)
MiRBase ID bta-mir-200b
Paralogues Bta-Mir-8-P1b  Bta-Mir-8-P2a  Bta-Mir-8-P2b  Bta-Mir-8-P3a 
Orthologues Aae-Mir-8  Aca-Mir-8-P1a  Ami-Mir-8-P1a  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Cfa-Mir-8-P1a  Cgi-Mir-8  Cin-Mir-8-P1  Cli-Mir-8-P1a  Cmi-Mir-8-P1a  Cpi-Mir-8-P1a  Cpo-Mir-8-P1a  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dno-Mir-8-P1a  Dpu-Mir-8  Dre-Mir-8-P1a  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Ete-Mir-8-P1a  Gga-Mir-8-P1a  Gja-Mir-8-P1a  Gmo-Mir-8-P1a  Hme-Mir-8  Hsa-Mir-8-P1a  Isc-Mir-8  Lan-Mir-8  Lch-Mir-8-P1a  Lgi-Mir-8  Loc-Mir-8-P1a  Mal-Mir-8-P1a  Mdo-Mir-8-P1a  Mml-Mir-8-P1a  Mmu-Mir-8-P1a  Mun-Mir-8-P1a  Npo-Mir-8  Oan-Mir-8-P1a  Obi-Mir-8  Ocu-Mir-8-P1a  Ovu-Mir-8  Pbv-Mir-8-P1a  Pfl-Mir-8  Pmi-Mir-8  Rno-Mir-8-P1a  Sha-Mir-8-P1a  Sko-Mir-8  Spt-Mir-8-P1a  Spu-Mir-8  Sto-Mir-8-P1a  Tca-Mir-8  Tgu-Mir-8-P1a  Tni-Mir-8-P1a  Xla-Mir-8-P1a1  Xla-Mir-8-P1a2  Xtr-Mir-8-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037343.1: 51323347-51323405 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1a)
Mir-8-P3a NC_037343.1: 51321456-51321513 [-] UCSC Ensembl
Mir-8-P2a NC_037343.1: 51322692-51322752 [-] UCSC Ensembl
Mir-8-P1a NC_037343.1: 51323347-51323405 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCAAGACCCAAUCCGGGGUGGCCAUCGCCAUCUUACUGGGCAGCAUUGGAUGGUGUCUGGUCUCUAAUACUGCCUGGUAAUGAUGACGCUGGGGCCCUGCUCGCAGCGACGGGGCCG
Get precursor sequence
Structure
        10           20        30         40        50        
CCCCAAGACCCAAUCCG---|   GG   U  C    -    UG     C      UGGUG 
                    GGGU  CCA CG CAUC UUAC  GGCAG AUUGGA     U
                    CCCG  GGU GC GUAG AAUG  CCGUC UAAUCU     C
GCCGGGGCAGCGACGCUCGU^   G-   C  A    U    GU     A      CUGGU 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-8-P1a_5p*

mirBase accessionNone
Sequence
0- CAUCUUACUGGGCAGCAUUGGA -22
Get sequence
Mature sequence

Bta-Mir-8-P1a_3p

mirBase accessionMIMAT0003842
Sequence
36- UAAUACUGCCUGGUAAUGAUGAC -59
Get sequence
Proposed targets TargetScanVert: bta-miR-200b