Mir-8-P2a

MirGeneDB ID

Gmo-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-200a

Paralogues

Gmo-Mir-8-P1a Gmo-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Aga-Mir-8 Agr-Mir-8 Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cin-Mir-8-P2 Cja-Mir-8-P2a Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Eca-Mir-8-P2a Eca-Mir-8-P2a-as Egr-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Laf-Mir-8-P2a Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mgi-Mir-8 Mml-Mir-8-P2a Mmr-Mir-8-P2a Mmu-Mir-8-P2a Mom-Mir-8 Mun-Mir-8-P2a Neu-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ofu-Mir-8 Ovu-Mir-8 Pab-Mir-8-P2a Pau-Mir-8 Pbv-Mir-8-P2a Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rno-Mir-8-P2a Rph-Mir-8 Sha-Mir-8-P2a Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Sto-Mir-8-P2a Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Tur-Mir-8 War-Mir-8 Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Nephrozoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_1125: 76985-77046 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P2a)

Mir-8-P1a GeneScaffold_1125: 76773-76832 [+] UCSC Ensembl
Mir-8-P2a GeneScaffold_1125: 76985-77046 [+] UCSC Ensembl
Mir-8-P3a GeneScaffold_1125: 78518-78576 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUCAUCUGGAAGAACCGGCUCCCAGGACCCAUCUUACCUGGCAGUGCUUGAUUGUAUGACUGGUCUUCUAACACUGUCUGGUAACGAUGUUUCCUGGGGGCCACAUGCGACACCAUGGCUC

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Structure

        10          20        30         40        50          
UGUCAUCUGGAAGAACC--           CC    -|    U       CUU  UUGUAUG 
                   GGCUCCCAGGA  CAUC UUACC GGCAGUG   GA       \
                   CCGGGGGUCCU  GUAG AAUGG CUGUCAC   CU       A
CUCGGUACCACAGCGUACA           UU    C^    U       AAU  UCUGGUC 
120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Star sequence

Gmo-Mir-8-P2a_5p*

mirBase accession

MIMAT0044105

Sequence

0- CAUCUUACCUGGCAGUGCUUGA -22

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Mature sequence

Gmo-Mir-8-P2a_3p

mirBase accession

MIMAT0044106

Sequence

39- UAACACUGUCUGGUAACGAUGUU -62

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